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parsing discrete colors in pathview KEGG
SIM
pathview
SIM
pathview
10.1 years ago
Luo Weijun
★ 1.6k
0
votes
0
replies
1.1k
views
Farms/Call.INI using oligo package?
probe
affy
oligo
SIM
farms
probe
affy
oligo
SIM
farms
10.4 years ago
Djork Clevert
▴ 210
0
votes
4
replies
3.2k
views
Pathview for global and overview maps Re: using pathview about hsa01100
Pathways
graph
PROcess
SIM
gage
pathview
Pathways
graph
PROcess
SIM
gage
pathview
updated 10.7 years ago by
Ed
▴ 230 • written 10.7 years ago by
Luo Weijun
★ 1.6k
0
votes
0
replies
964
views
SNP6.0 annotation
SNP
Annotation
probe
annotate
SIM
SNP
Annotation
probe
annotate
SIM
11.4 years ago
Guest User
★ 13k
0
votes
1
reply
1.5k
views
KEGGgraph bug
Pathways
Organism
SIM
KEGGgraph
Pathways
Organism
SIM
KEGGgraph
updated 14.4 years ago by
Marc Carlson
★ 7.2k • written 14.4 years ago by
Fraser Sim
▴ 270
0
votes
6
replies
1.5k
views
installation of Rgraphviz
Rgraphviz
SIM
Rgraphviz
SIM
updated 15.0 years ago by
Patrick Aboyoun
★ 1.6k • written 15.0 years ago by
ravi
▴ 130
0
votes
8
replies
1.6k
views
FW: Graphviz in Vista64
Rgraphviz
SIM
Rgraphviz
SIM
updated 15.1 years ago by
Martin Morgan
25k • written 15.1 years ago by
Sim, Fraser
▴ 350
0
votes
0
replies
1.5k
views
Cutoff to use for IQR filtering in genefilter
genefilter
affy
limma
GeneSpring
affylmGUI
GLAD
SIM
genefilter
affy
limma
GeneSpring
15.8 years ago
Mark Cowley
▴ 400
8 results • Page
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Comment: How to make DGEList and design matrix by edgeR package
by
prity6459
• 0
Thank you for your suggestion. Yes, I have made DGEList and design matrix in my script. But I was not entirely confident while making thos…
Comment: Finding DEGs by using edgeR
by
prity6459
• 0
Hello Gordon, Thanks for your response. By normalization, I meant that I have already removed lowly expressed genes from my count matrix. …
Answer: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
It doesn't seem to me that there is necessarily any problem with the analysis. You that there are "too many low-reads" but actually there …
Answer: How to make DGEList and design matrix by edgeR package
by
Gordon Smyth
50k
Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…
Answer: Finding DEGs by using edgeR
by
Gordon Smyth
50k
I am not clear what you mean that you have already normalized your data. How exactly did you normalize the data? The best way to do an edg…
Votes
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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