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Comment: Warnings when using "ashr" in lfcshrinkage for DESeq2 by ATpoint ★ 1.2k
I've seen this as well in my work recently, can even reproduce it with the example data after filtering for genes with 10 or more counts in…
Comment: UniprotKB AC/ID to Entrez ID Conversion by tom.kloter • 0
Hi, I updated R, RStudio as well as the packages and now everything is working neatly! Thank you so much for your contributions to my prob…
Answer: How to run GSVA with partially NA genes by Robert Castelo ★ 2.8k
hi, a warning is not an error and this particular warning says that genes with constant expression values are discarded from calculation…
Comment: How to best visualize multi-level transcriptomics experiment data? by mohammedtoufiq91 ▴ 10
@gordonsmyth, thank you very much. I will try your suggestions.
Comment: Transcript-level differential expression using DESeq2 by Ekta • 0
Ok.. thanks for your valuable suggestion and quick replies. I have generated an MA plot using plotMASwish. thanks ekta
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Answer: UniprotKB AC/ID to Entrez ID Conversion
edgeR: what to do with no replicates
Differential gene expression anlaysis?
Answer: How to best visualize multi-level transcriptomics experiment data?
Differential gene expression anlaysis?
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Scholar to Gordon Smyth 45k
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