Showing : simpleaffy • reset
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7
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2.2k
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simpleaffy error
simpleaffy simpleaffy
20.6 years ago kfbargad@lg.ehu.es ▴ 260
0
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9
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2.1k
views
problem with function rma
Normalization rat2302 cdf genefilter affy simpleaffy affyQCReport affyio Normalization
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ▴ 80
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5
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1.8k
views
simpleAffy QC on HT_HG-U133_Plus_PM
cdf affy simpleaffy cdf affy simpleaffy
15.2 years ago Michael Walter ▴ 160
0
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6
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1.5k
views
problems using simpleaffy
probe simpleaffy probe simpleaffy
updated 19.8 years ago by ★ 7.4k • written 19.9 years ago by ▴ 510
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3
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1.6k
views
package simpleaffy
Genetics affy simpleaffy Genetics affy simpleaffy
updated 20.9 years ago by ★ 3.9k • written 20.9 years ago by ▴ 20
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3
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1.3k
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phenoData
simpleaffy simpleaffy
20.8 years ago Simon Kidd ▴ 180
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3
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1.5k
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Recent changes to Bioconductor packages
reposTools graph Rgraphviz simpleaffy impute reposTools graph Rgraphviz simpleaffy impute
21.0 years ago • updated 20.9 years ago madman@jimmy.harvard.edu ▴ 850
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4
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1.5k
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error with results.summary in simpleaffy
Annotation Cancer hgu133a probe simpleaffy Annotation Cancer hgu133a probe simpleaffy
updated 19.5 years ago by ▴ 160 • written 19.6 years ago by ★ 1.1k
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5
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2.1k
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affyPLM - cant plot chip pseudo image
cdf genefilter affy affydata affyPLM simpleaffy affyio cdf genefilter affy affydata
updated 17.5 years ago by 67k • written 17.5 years ago by ▴ 50
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6
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2.1k
views
ReadAffy Error: new versions causing problems?
genefilter gcrma matchprobes simpleaffy affyio genefilter gcrma matchprobes simpleaffy
updated 17.7 years ago by ▴ 20 • written 17.7 years ago by ▴ 200
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3
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1.3k
views
Error doing Mas5 calculation with Simpleaffy package
Yeast affy simpleaffy Yeast affy simpleaffy
updated 20.7 years ago by ★ 1.1k • written 20.7 years ago by ▴ 50
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3
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1.5k
views
qc.stats error with mgu74av2
mgu74av2 probe simpleaffy mgu74av2 probe simpleaffy
updated 21.0 years ago by ★ 1.1k • written 21.0 years ago by ★ 1.4k
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2
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1.5k
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Problem with Annotation of Mouse4302.db in simpleaffy
Annotation mouse4302 simpleaffy GLAD Annotation mouse4302 simpleaffy GLAD
updated 16.0 years ago by 67k • written 16.0 years ago by ▴ 40
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2
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1.5k
views
simpleaffy and yeast2cdf problems
Survival cdf genefilter affy simpleaffy Survival cdf genefilter affy simpleaffy
updated 18.1 years ago by ▴ 160 • written 18.1 years ago by ▴ 50
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2
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1.6k
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one problem about IRanges Package
simpleaffy IRanges simpleaffy IRanges
updated 14.2 years ago by 6.7k • written 14.2 years ago by ▴ 50
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3
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1.2k
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AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf genefilter affy simpleaffy affyQCReport cdf genefilter affy simpleaffy affyQCReport
updated 18.0 years ago by ★ 1.1k • written 18.0 years ago by ▴ 270
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2
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3.2k
views
Error in function (classes, fdef, mtable)
cdf genefilter reposTools gcrma matchprobes affyPLM simpleaffy affyio cdf genefilter
updated 18.2 years ago by ★ 7.4k • written 18.2 years ago by ▴ 360
1
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3
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2.0k
views
QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy affy affyQCReport
10.0 years ago • updated 9.9 years ago federico.comoglio ▴ 100
4
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3
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1.4k
views
GCRMA not working inside tryCatch block in R
gcrma simpleaffy error handling trycatch
updated 6.3 years ago by 67k • written 6.3 years ago by • 0
0
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4
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1.9k
views
Microarray query
simpleaffy simpleaffy
updated 13.8 years ago by ▴ 580 • written 13.8 years ago by ▴ 40
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2
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1.2k
views
SimpleAffy: problem with Yeast Genome 2.0 Array
Yeast cdf simpleaffy Yeast cdf simpleaffy
updated 19.2 years ago by ★ 2.2k • written 19.2 years ago by ▴ 170
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3
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1.4k
views
qc in simpleaffy
GO simpleaffy GO simpleaffy
15.8 years ago Mayte Suarez-Farinas ▴ 510
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9
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2.2k
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problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 17.7 years ago by ★ 7.4k • written 17.7 years ago by ★ 2.2k
0
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12
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2.4k
views
Building BioC 2.2 with R 2.7.0
GO annaffy simpleaffy GO annaffy simpleaffy
updated 16.7 years ago by ▴ 630 • written 16.7 years ago by ▴ 160
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2
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1.5k
views
results.summary function returns error
Microarray Annotation hgu133a simpleaffy Microarray Annotation hgu133a simpleaffy
updated 12.2 years ago by 67k • written 12.2 years ago by ★ 13k
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1
reply
850
views
RMA warning message about missing se.exprs
Survival Cancer cdf genefilter simpleaffy Survival Cancer cdf genefilter simpleaffy
updated 17.7 years ago by 25k • written 17.7 years ago by ▴ 110
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1
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1.1k
views
QC stats plot
moe430a simpleaffy moe430a simpleaffy
updated 20.2 years ago by ★ 5.5k • written 20.2 years ago by ▴ 110
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1
reply
990
views
error in ygs98cdf environment?
Microarray simpleaffy Microarray simpleaffy
updated 20.2 years ago by ★ 1.1k • written 20.2 years ago by ▴ 300
0
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1
reply
1.6k
views
simpleaffy
simpleaffy simpleaffy
updated 20.8 years ago by ▴ 50 • written 20.8 years ago by ▴ 180
0
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1
reply
1.6k
views
SimpeAffy: how to get/generate qcdef file?
cdf probe affy simpleaffy cdf probe affy simpleaffy
updated 16.0 years ago by ▴ 30 • written 16.0 years ago by ▴ 170
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1
reply
1.1k
views
simpleaffy plot error
Survival cdf genefilter simpleaffy Survival cdf genefilter simpleaffy
updated 17.7 years ago by ★ 1.1k • written 17.7 years ago by ▴ 510
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4
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1.6k
views
error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 18.0 years ago by ★ 13k • written 18.0 years ago by ▴ 830
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1
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1.4k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 19.5 years ago by ★ 1.4k • written 19.5 years ago by ★ 1.1k
0
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1
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884
views
problems using cdfenv
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
updated 20.3 years ago by 67k • written 20.3 years ago by ▴ 510
0
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1
reply
1.4k
views
annaffy errors
GO Survival mgu74av2 cdf annotate affy limma gcrma matchprobes annaffy simpleaffy plier
updated 18.0 years ago by 67k • written 18.0 years ago by ▴ 320
0
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1
reply
735
views
qc and plasmodium anopheles chips
simpleaffy simpleaffy
updated 17.8 years ago by 67k • written 17.8 years ago by ▴ 510
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2
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1.3k
views
simpleaffy problem
probe simpleaffy probe simpleaffy
updated 20.4 years ago by ★ 1.1k • written 20.4 years ago by ▴ 380
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1
reply
851
views
RE: BioC] simpleaffy betacf error in 1.2.3
GO simpleaffy GO simpleaffy
updated 20.5 years ago by ★ 1.1k • written 20.5 years ago by ▴ 20
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1
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3.0k
views
ReadAffy can not find function read.AnnotatedDataFrame
Biobase genefilter affydata limma simpleaffy hopach affyio Biobase genefilter affydata
updated 18.2 years ago by 67k • written 18.2 years ago by ▴ 510
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1
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1.1k
views
problem loading simpleaffy library package
simpleaffy simpleaffy
updated 21.0 years ago by ★ 3.9k • written 21.0 years ago by ▴ 300
0
votes
1
reply
1.4k
views
[R] problem loading affycoretools - solved!
Biobase Ruuid genefilter multtest graph limma gcrma matchprobes affyPLM RBGL simpleaffy
updated 18.5 years ago by ★ 7.4k • written 18.5 years ago by ★ 2.2k
0
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1
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1.3k
views
justMAS and mas5
hgu133a cdf simpleaffy hgu133a cdf simpleaffy
updated 19.6 years ago by ★ 1.1k • written 19.6 years ago by ▴ 30
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1
reply
978
views
qc
Survival Biobase genefilter affy affydata affyPLM simpleaffy affyio Survival Biobase
updated 18.5 years ago by 67k • written 18.5 years ago by ▴ 10
0
votes
1
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1.2k
views
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
updated 19.6 years ago by ★ 1.4k • written 19.6 years ago by ★ 1.1k
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2
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1.8k
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problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 18.1 years ago by 67k • written 18.1 years ago by ▴ 890
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2
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1.3k
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zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 19.5 years ago by ▴ 780 • written 19.5 years ago by ★ 1.4k
0
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1
reply
1.2k
views
simpleAffy, custom chip error
Microarray Cancer cdf probe Biobase affy gcrma matchprobes simpleaffy Microarray Cancer
updated 19.6 years ago by ★ 1.1k • written 19.6 years ago by ▴ 10
0
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1
reply
1.3k
views
error with plot in simpleaffy
hgu133plus2 probe simpleaffy hgu133plus2 probe simpleaffy
19.8 years ago Larry La Pointe ▴ 60
0
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1
reply
1.2k
views
Simple Affy
cdf affy simpleaffy cdf affy simpleaffy
updated 20.6 years ago by ★ 1.1k • written 20.6 years ago by ▴ 510
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votes
1
reply
974
views
Detection call for Hu6800
hu6800 probe simpleaffy hu6800 probe simpleaffy
updated 19.8 years ago by ▴ 270 • written 19.8 years ago by ▴ 280
50 results • Page 1 of 1
Recent ...
Replies
Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…
Answer: Selection of correct coefficients or contrasts in DESeq2 by James W. MacDonald 67k
Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…
Comment: How to generate circular cnetplot and color nodes and edges in the same plot ? by Blandine • 0
Thank you so much ! It's working !
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by James W. MacDonald 67k
Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…
Comment: Recount3 data correspond to TCGA data by Leonardo Collado Torres ★ 1.1k
Thanks @fep29! ^^
Votes
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
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