Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
simpleaffy
•
reset
5
votes
4
replies
2.7k
views
Although I successfully installed the package "simpleaffy'' , I cannot library it. Why?
simpleaffy
2.3 years ago
yanchangjian2019
• 0
0
votes
1
reply
696
views
Error using simpleaffy
software error
simpleaffy
genefilter
updated 4.7 years ago by
James W. MacDonald
65k • written 4.7 years ago by
jordiroval
• 0
4
votes
3
replies
1.1k
views
GCRMA not working inside tryCatch block in R
gcrma
simpleaffy
error handling
trycatch
updated 5.6 years ago by
James W. MacDonald
65k • written 5.6 years ago by
perdedorium
• 0
2
votes
8
replies
4.1k
views
Clariom D Human Microarray CDF file to package
simpleaffy
makecdfenv
7.6 years ago
jayme.rickman
• 0
0
votes
0
replies
1.3k
views
Export expressionSet to ArrayExpress "processed data"
expressionset
simpleaffy
arrayexpress
tsv
7.7 years ago
Steffen Neumann
▴ 30
0
votes
1
reply
938
views
simpleaffy issue with empty PairComp calls slot
simpleaffy
microarray
r
updated 8.7 years ago by
James W. MacDonald
65k • written 8.7 years ago by
mgrieshop
• 0
1
vote
3
replies
1.9k
views
QC probes in HTA2-0
affy
qc
simpleaffy
HTA
updated 9.1 years ago by
James W. MacDonald
65k • written 9.1 years ago by
Guilherme Rocha
▴ 40
1
vote
3
replies
1.9k
views
QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy
affy
affyQCReport
9.2 years ago
federico.comoglio
▴ 100
0
votes
3
replies
1.3k
views
Is a subset of my arrays from degraded RNA?
Microarray
GO
Clustering
affy
affyPLM
simpleaffy
Microarray
GO
Clustering
affy
affyPLM
9.8 years ago
Peter Davidsen
▴ 210
0
votes
0
replies
1.6k
views
QC for HT HGU133A and U133A X3P
hgu133a
hgu133plus2
cdf
simpleaffy
yaqcaffy
hgu133a
hgu133plus2
cdf
simpleaffy
yaqcaffy
10.6 years ago
b a
▴ 40
0
votes
0
replies
1.0k
views
QC for HT HGU133A and U133A X3P
hgu133a
hgu133plus2
cdf
simpleaffy
yaqcaffy
hgu133a
hgu133plus2
cdf
simpleaffy
yaqcaffy
10.6 years ago
b a
▴ 40
0
votes
3
replies
7.6k
views
Error: cannot allocate vector of size
gcrma
simpleaffy
gcrma
simpleaffy
updated 10.8 years ago by
James W. MacDonald
65k • written 10.8 years ago by
chittabrata mal
▴ 50
0
votes
3
replies
1.2k
views
simple
GO
simpleaffy
GO
simpleaffy
updated 10.8 years ago by
James W. MacDonald
65k • written 10.8 years ago by
Guest User
★ 13k
0
votes
1
reply
1.1k
views
Problem when loading simpleaffy package
simpleaffy
simpleaffy
updated 10.9 years ago by
Martin Morgan
25k • written 10.9 years ago by
Michael Steeves
▴ 40
0
votes
2
replies
1.3k
views
results.summary function returns error
Microarray
Annotation
hgu133a
simpleaffy
Microarray
Annotation
hgu133a
simpleaffy
updated 11.4 years ago by
James W. MacDonald
65k • written 11.4 years ago by
Guest User
★ 13k
0
votes
0
replies
1.1k
views
Issue with Genome Graphs
Annotation
simpleaffy
oligo
GenomeGraphs
frma
Annotation
simpleaffy
oligo
GenomeGraphs
11.5 years ago
Jeremy Ng
▴ 180
0
votes
0
replies
1.0k
views
Simpleaffy error : No methods found in "Biobase" for requests: geneNames
simpleaffy
simpleaffy
11.5 years ago
Matthew Thornton
▴ 350
0
votes
0
replies
1.3k
views
library(simpleaffy) error
simpleaffy
simpleaffy
11.5 years ago
Matthew Thornton
▴ 350
0
votes
1
reply
2.0k
views
simpleaffy() not recognizing cdf file
cdf
simpleaffy
cdf
simpleaffy
updated 11.6 years ago by
James W. MacDonald
65k • written 11.6 years ago by
Guest User
★ 13k
0
votes
0
replies
1.2k
views
Odd warning in simpleaffy, using quality control
cdf
simpleaffy
cdf
simpleaffy
12.0 years ago
ejulia
▴ 10
0
votes
1
reply
2.5k
views
Mas5 log transformed data
Microarray
Normalization
simpleaffy
Microarray
Normalization
simpleaffy
updated 12.1 years ago by
James W. MacDonald
65k • written 12.1 years ago by
Guest User
★ 13k
0
votes
2
replies
1.8k
views
Odd warning in simpleaffy, using quality control
cdf
probe
simpleaffy
ArrayExpress
cdf
probe
simpleaffy
ArrayExpress
updated 12.2 years ago by
David Westergaard
▴ 280 • written 12.2 years ago by
boczniak767
▴ 720
0
votes
0
replies
1.2k
views
Odd warning in simpleaffy, using quality control
cdf
simpleaffy
ArrayExpress
cdf
simpleaffy
ArrayExpress
12.2 years ago
David Westergaard
▴ 280
0
votes
1
reply
986
views
[simpleaffy] maizecdf.qcdef
simpleaffy
simpleaffy
12.6 years ago
boczniak767
▴ 720
0
votes
4
replies
1.7k
views
Microarray query
simpleaffy
simpleaffy
updated 13.0 years ago by
viritha kaza
▴ 580 • written 13.0 years ago by
Umme Rummana
▴ 40
0
votes
1
reply
1.1k
views
(no subject)
simpleaffy
simpleaffy
updated 13.0 years ago by
Steve Lianoglou
★ 13k • written 13.0 years ago by
Umme Rummana
▴ 40
0
votes
0
replies
1.1k
views
quality control of affy Chips for miRNA
miRNA
cdf
probe
affy
simpleaffy
affyQCReport
affycoretools
arrayQualityMetrics
miRNA
cdf
13.2 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
1
reply
1.0k
views
quality control of affy Chips for miRNA
miRNA
cdf
affy
simpleaffy
affyQCReport
affycoretools
miRNA
cdf
affy
simpleaffy
updated 13.2 years ago by
James W. MacDonald
65k • written 13.2 years ago by
Assa Yeroslaviz
★ 1.5k
0
votes
3
replies
1.0k
views
Quality Control of Exon arrays using xps?
simpleaffy
simpleaffy
updated 13.4 years ago by
cstrato
★ 3.9k • written 13.4 years ago by
Achilleas Pitsillides
▴ 170
0
votes
0
replies
1.1k
views
drosophila2cdf in simpleaffy / affyQCReport
cdf
simpleaffy
affyQCReport
cdf
simpleaffy
affyQCReport
13.5 years ago
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
1.5k
views
one problem about IRanges Package
simpleaffy
IRanges
simpleaffy
IRanges
updated 13.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 13.5 years ago by
cao zongfu
▴ 50
0
votes
0
replies
848
views
Simpleaffy problems
Annotation
probe
affy
matchprobes
simpleaffy
AnnotationDbi
Annotation
probe
affy
13.6 years ago
James W. MacDonald
65k
0
votes
1
reply
814
views
problem in installing simpleaffy packeges
simpleaffy
simpleaffy
updated 13.9 years ago by
Martin Morgan
25k • written 13.9 years ago by
NUTAN CHAUHAN
▴ 20
0
votes
0
replies
941
views
question regarding qc function in simpleaffy package
cdf
affy
simpleaffy
cdf
affy
simpleaffy
14.1 years ago
Groot, Philip de
▴ 630
0
votes
0
replies
1.7k
views
Error in getCdfInfo(object)
cdf
simpleaffy
cdf
simpleaffy
14.1 years ago
Arun A K
▴ 20
0
votes
0
replies
919
views
question regarding qc function in simpleaffy package
cdf
affy
simpleaffy
cdf
affy
simpleaffy
14.1 years ago
James Anderson
▴ 820
0
votes
0
replies
770
views
question about QC and Simpleaffy package
simpleaffy
simpleaffy
14.2 years ago
James Anderson
▴ 820
0
votes
5
replies
1.6k
views
simpleAffy QC on HT_HG-U133_Plus_PM
cdf
affy
simpleaffy
cdf
affy
simpleaffy
14.4 years ago
Michael Walter
▴ 160
0
votes
1
reply
1.3k
views
Group samples on heatmap?
simpleaffy
simpleaffy
updated 14.7 years ago by
James W. MacDonald
65k • written 14.8 years ago by
Michael Imbeault
▴ 220
0
votes
3
replies
1.2k
views
qc in simpleaffy
GO
simpleaffy
GO
simpleaffy
15.0 years ago
Mayte Suarez-Farinas
▴ 510
0
votes
1
reply
1.5k
views
SimpeAffy: how to get/generate qcdef file?
cdf
probe
affy
simpleaffy
cdf
probe
affy
simpleaffy
updated 15.2 years ago by
claire wilson
▴ 30 • written 15.2 years ago by
Renaud Gaujoux
▴ 170
0
votes
0
replies
860
views
SimpeAffy: how to get/generate qcdef file?
cdf
simpleaffy
cdf
simpleaffy
15.2 years ago
Renaud Gaujoux
▴ 170
0
votes
2
replies
1.3k
views
Problem with Annotation of Mouse4302.db in simpleaffy
Annotation
mouse4302
simpleaffy
GLAD
Annotation
mouse4302
simpleaffy
GLAD
updated 15.2 years ago by
James W. MacDonald
65k • written 15.2 years ago by
Marietta Herrmann
▴ 40
0
votes
0
replies
1.0k
views
simpleaffy with hgu133plus2
hgu133plus2
simpleaffy
hgu133plus2
simpleaffy
15.3 years ago
dorothyc
▴ 140
0
votes
2
replies
1.1k
views
Simpleaffy: how are 3/5 ratios calculated
graph
simpleaffy
PROcess
graph
simpleaffy
PROcess
updated 15.6 years ago by
Yogi Sundaravadanam
▴ 320 • written 15.6 years ago by
Ganiraju Manyam
▴ 50
0
votes
1
reply
805
views
Background values
Microarray
gcrma
simpleaffy
Microarray
gcrma
simpleaffy
updated 15.7 years ago by
Wolfgang Huber
★ 13k • written 15.7 years ago by
Louisa A Rispoli/AS/EXP/UTIA
▴ 160
0
votes
1
reply
1.2k
views
library(affyQCReport)-NA(arg1); arrayQualityMetrics-no end
Cancer
cdf
affy
simpleaffy
affyQCReport
affyio
arrayQualityMetrics
Cancer
cdf
affy
updated 15.7 years ago by
rgentleman
★ 5.5k • written 15.7 years ago by
Yisong Zhen
▴ 200
0
votes
0
replies
872
views
simpleaffy pairwise.comparison problem
simpleaffy
simpleaffy
15.8 years ago
David Ruau
▴ 190
0
votes
12
replies
2.0k
views
Building BioC 2.2 with R 2.7.0
GO
annaffy
simpleaffy
GO
annaffy
simpleaffy
updated 15.9 years ago by
Groot, Philip de
▴ 630 • written 15.9 years ago by
Atro Tossavainen
▴ 160
0
votes
1
reply
850
views
simpleAffy with bovine cdf
cdf
simpleaffy
cdf
simpleaffy
16.0 years ago
Paul Geeleher
★ 1.3k
50 results • Page
1 of 1
Recent ...
Replies
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
swbarnes2
★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error
by
James W. MacDonald
65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
Awards
• All
Popular Question
to
Bine
▴ 40
Scholar
to
ATpoint
★ 4.0k
Popular Question
to
Gordon Smyth
50k
Popular Question
to
i.sudbery
▴ 40
Scholar
to
Michael Love
41k
Locations
• All
United States,
1 minute ago
India,
2 minutes ago
France,
9 minutes ago
Brazil,
11 minutes ago
United States,
32 minutes ago
Traffic: 907 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6