Showing : simpleaffy • reset
0
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12
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2.0k
views
Building BioC 2.2 with R 2.7.0
GO annaffy simpleaffy GO annaffy simpleaffy
updated 15.9 years ago by ▴ 630 • written 15.9 years ago by ▴ 160
0
votes
9
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1.8k
views
problem with function rma
Normalization rat2302 cdf genefilter affy simpleaffy affyQCReport affyio Normalization
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ▴ 80
0
votes
9
replies
1.8k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ★ 2.2k
2
votes
8
replies
4.1k
views
Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
7.6 years ago jayme.rickman • 0
0
votes
7
replies
2.0k
views
simpleaffy error
simpleaffy simpleaffy
19.8 years ago kfbargad@lg.ehu.es ▴ 260
0
votes
6
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1.9k
views
ReadAffy Error: new versions causing problems?
genefilter gcrma matchprobes simpleaffy affyio genefilter gcrma matchprobes simpleaffy
updated 16.9 years ago by ▴ 20 • written 16.9 years ago by ▴ 200
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6
replies
1.3k
views
problems using simpleaffy
probe simpleaffy probe simpleaffy
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 510
0
votes
5
replies
1.9k
views
affyPLM - cant plot chip pseudo image
cdf genefilter affy affydata affyPLM simpleaffy affyio cdf genefilter affy affydata
updated 16.8 years ago by 65k • written 16.8 years ago by ▴ 50
0
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5
replies
1.6k
views
simpleAffy QC on HT_HG-U133_Plus_PM
cdf affy simpleaffy cdf affy simpleaffy
14.4 years ago Michael Walter ▴ 160
5
votes
4
replies
2.7k
views
Although I successfully installed the package "simpleaffy'' , I cannot library it. Why?
simpleaffy
2.3 years ago yanchangjian2019 • 0
0
votes
4
replies
1.3k
views
error with results.summary in simpleaffy
Annotation Cancer hgu133a probe simpleaffy Annotation Cancer hgu133a probe simpleaffy
updated 18.8 years ago by ▴ 160 • written 18.8 years ago by ★ 1.1k
0
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4
replies
1.7k
views
Microarray query
simpleaffy simpleaffy
updated 13.0 years ago by ▴ 580 • written 13.0 years ago by ▴ 40
0
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4
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1.3k
views
problems rma() with mouse exon affy data in exonmap package
Survival cdf genefilter affy simpleaffy plier exonmap Survival cdf genefilter affy
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 20
0
votes
4
replies
1.1k
views
problem with loading affyQCReport
simpleaffy affyQCReport simpleaffy affyQCReport
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ▴ 10
0
votes
4
replies
1.3k
views
error with AffyQCReport
cdf annotate affy limma RBGL simpleaffy GOstats affyQCReport cdf annotate affy limma
updated 17.2 years ago by ★ 13k • written 17.2 years ago by ▴ 830
0
votes
3
replies
7.6k
views
Error: cannot allocate vector of size
gcrma simpleaffy gcrma simpleaffy
updated 10.8 years ago by 65k • written 10.8 years ago by ▴ 50
0
votes
3
replies
1.3k
views
Recent changes to Bioconductor packages
reposTools graph Rgraphviz simpleaffy impute reposTools graph Rgraphviz simpleaffy impute
20.2 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
3
replies
1.2k
views
qc.stats error with mgu74av2
mgu74av2 probe simpleaffy mgu74av2 probe simpleaffy
updated 20.2 years ago by ★ 1.1k • written 20.2 years ago by ★ 1.4k
0
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3
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1.0k
views
AffyQCReport: "I'm sorry, I do not know about chip type" (celeganscdf)
cdf genefilter affy simpleaffy affyQCReport cdf genefilter affy simpleaffy affyQCReport
updated 17.2 years ago by ★ 1.1k • written 17.2 years ago by ▴ 270
4
votes
3
replies
1.1k
views
GCRMA not working inside tryCatch block in R
gcrma simpleaffy error handling trycatch
updated 5.6 years ago by 65k • written 5.6 years ago by • 0
1
vote
3
replies
1.9k
views
QC probes in HTA2-0
affy qc simpleaffy HTA
updated 9.1 years ago by 65k • written 9.1 years ago by ▴ 40
0
votes
3
replies
1.3k
views
Is a subset of my arrays from degraded RNA?
Microarray GO Clustering affy affyPLM simpleaffy Microarray GO Clustering affy affyPLM
9.8 years ago Peter Davidsen ▴ 210
0
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3
replies
1.2k
views
simple
GO simpleaffy GO simpleaffy
updated 10.8 years ago by 65k • written 10.8 years ago by ★ 13k
0
votes
3
replies
1.2k
views
qc in simpleaffy
GO simpleaffy GO simpleaffy
15.0 years ago Mayte Suarez-Farinas ▴ 510
0
votes
3
replies
1.3k
views
package simpleaffy
Genetics affy simpleaffy Genetics affy simpleaffy
updated 20.1 years ago by ★ 3.9k • written 20.1 years ago by ▴ 20
0
votes
3
replies
1.0k
views
Quality Control of Exon arrays using xps?
simpleaffy simpleaffy
updated 13.4 years ago by ★ 3.9k • written 13.4 years ago by ▴ 170
0
votes
3
replies
1.1k
views
Error doing Mas5 calculation with Simpleaffy package
Yeast affy simpleaffy Yeast affy simpleaffy
updated 19.9 years ago by ★ 1.1k • written 20.0 years ago by ▴ 50
0
votes
3
replies
992
views
minimum expression level (Simpleaffy)
Normalization simpleaffy Normalization simpleaffy
updated 16.2 years ago by ▴ 310 • written 16.2 years ago by ▴ 90
0
votes
3
replies
1.1k
views
phenoData
simpleaffy simpleaffy
20.1 years ago Simon Kidd ▴ 180
1
vote
3
replies
1.9k
views
QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy affy affyQCReport
9.2 years ago federico.comoglio ▴ 100
0
votes
2
replies
1.1k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 18.8 years ago by ▴ 780 • written 18.8 years ago by ★ 1.4k
0
votes
2
replies
991
views
SimpleAffy: problem with Yeast Genome 2.0 Array
Yeast cdf simpleaffy Yeast cdf simpleaffy
updated 18.5 years ago by ★ 2.2k • written 18.5 years ago by ▴ 170
0
votes
2
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1.2k
views
simpleaffy and yeast2cdf problems
Survival cdf genefilter affy simpleaffy Survival cdf genefilter affy simpleaffy
updated 17.3 years ago by ▴ 160 • written 17.3 years ago by ▴ 50
0
votes
2
replies
1.1k
views
simpleaffy problem
probe simpleaffy probe simpleaffy
updated 19.7 years ago by ★ 1.1k • written 19.7 years ago by ▴ 380
0
votes
2
replies
2.9k
views
Error in function (classes, fdef, mtable)
cdf genefilter reposTools gcrma matchprobes affyPLM simpleaffy affyio cdf genefilter
updated 17.4 years ago by ★ 7.4k • written 17.4 years ago by ▴ 360
0
votes
2
replies
1.8k
views
Odd warning in simpleaffy, using quality control
cdf probe simpleaffy ArrayExpress cdf probe simpleaffy ArrayExpress
updated 12.2 years ago by ▴ 280 • written 12.2 years ago by ▴ 720
0
votes
2
replies
1.3k
views
results.summary function returns error
Microarray Annotation hgu133a simpleaffy Microarray Annotation hgu133a simpleaffy
updated 11.4 years ago by 65k • written 11.4 years ago by ★ 13k
0
votes
2
replies
1.6k
views
problem with hist.default in affystart in package affycoretools
GO cdf annotate affy limma RBGL simpleaffy GOstats Category affyQCReport affyio GO cdf
updated 17.3 years ago by 65k • written 17.3 years ago by ▴ 890
0
votes
2
replies
1.3k
views
Problem with Annotation of Mouse4302.db in simpleaffy
Annotation mouse4302 simpleaffy GLAD Annotation mouse4302 simpleaffy GLAD
updated 15.2 years ago by 65k • written 15.2 years ago by ▴ 40
0
votes
2
replies
1.1k
views
Simpleaffy: how are 3/5 ratios calculated
graph simpleaffy PROcess graph simpleaffy PROcess
updated 15.6 years ago by ▴ 320 • written 15.6 years ago by ▴ 50
0
votes
2
replies
1.5k
views
one problem about IRanges Package
simpleaffy IRanges simpleaffy IRanges
updated 13.5 years ago by 6.7k • written 13.5 years ago by ▴ 50
0
votes
1
reply
1.5k
views
SimpeAffy: how to get/generate qcdef file?
cdf probe affy simpleaffy cdf probe affy simpleaffy
updated 15.2 years ago by ▴ 30 • written 15.2 years ago by ▴ 170
0
votes
1
reply
728
views
RMA warning message about missing se.exprs
Survival Cancer cdf genefilter simpleaffy Survival Cancer cdf genefilter simpleaffy
updated 17.0 years ago by 25k • written 17.0 years ago by ▴ 110
0
votes
1
reply
946
views
QC stats plot
moe430a simpleaffy moe430a simpleaffy
updated 19.4 years ago by ★ 5.5k • written 19.4 years ago by ▴ 110
0
votes
1
reply
874
views
error in ygs98cdf environment?
Microarray simpleaffy Microarray simpleaffy
updated 19.4 years ago by ★ 1.1k • written 19.4 years ago by ▴ 300
0
votes
1
reply
1.4k
views
simpleaffy
simpleaffy simpleaffy
updated 20.1 years ago by ▴ 50 • written 20.1 years ago by ▴ 180
0
votes
1
reply
939
views
simpleaffy plot error
Survival cdf genefilter simpleaffy Survival cdf genefilter simpleaffy
updated 16.9 years ago by ★ 1.1k • written 16.9 years ago by ▴ 510
0
votes
1
reply
1.2k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 18.8 years ago by ★ 1.4k • written 18.8 years ago by ★ 1.1k
0
votes
1
reply
759
views
problems using cdfenv
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
updated 19.5 years ago by 65k • written 19.5 years ago by ▴ 510
0
votes
1
reply
1.2k
views
annaffy errors
GO Survival mgu74av2 cdf annotate affy limma gcrma matchprobes annaffy simpleaffy plier
updated 17.2 years ago by 65k • written 17.2 years ago by ▴ 320
50 results • Page 1 of 1
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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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