Showing : simpleaffy • reset
5
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4
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2.7k
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Although I successfully installed the package "simpleaffy'' , I cannot library it. Why?
simpleaffy
2.3 years ago yanchangjian2019 • 0
4
votes
3
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1.1k
views
GCRMA not working inside tryCatch block in R
gcrma simpleaffy error handling trycatch
updated 5.6 years ago by 65k • written 5.6 years ago by • 0
2
votes
8
replies
4.1k
views
Clariom D Human Microarray CDF file to package
simpleaffy makecdfenv
7.6 years ago jayme.rickman • 0
1
vote
3
replies
1.9k
views
QC probes in HTA2-0
affy qc simpleaffy HTA
updated 9.1 years ago by 65k • written 9.1 years ago by ▴ 40
1
vote
3
replies
1.9k
views
QC for Affymetrix miRNA 4.0 arrays: Error from qc/QCReport
simpleaffy affy affyQCReport
9.2 years ago federico.comoglio ▴ 100
0
votes
0
replies
848
views
Simpleaffy problems
Annotation probe affy matchprobes simpleaffy AnnotationDbi Annotation probe affy
13.6 years ago James W. MacDonald 65k
0
votes
1
reply
1.5k
views
SimpeAffy: how to get/generate qcdef file?
cdf probe affy simpleaffy cdf probe affy simpleaffy
updated 15.2 years ago by ▴ 30 • written 15.2 years ago by ▴ 170
0
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2
replies
1.2k
views
simpleaffy and yeast2cdf problems
Survival cdf genefilter affy simpleaffy Survival cdf genefilter affy simpleaffy
updated 17.3 years ago by ▴ 160 • written 17.3 years ago by ▴ 50
0
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3
replies
1.2k
views
qc.stats error with mgu74av2
mgu74av2 probe simpleaffy mgu74av2 probe simpleaffy
updated 20.2 years ago by ★ 1.1k • written 20.2 years ago by ★ 1.4k
0
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1
reply
1.0k
views
problem loading simpleaffy library package
simpleaffy simpleaffy
updated 20.3 years ago by ★ 3.9k • written 20.3 years ago by ▴ 300
0
votes
3
replies
1.3k
views
Recent changes to Bioconductor packages
reposTools graph Rgraphviz simpleaffy impute reposTools graph Rgraphviz simpleaffy impute
20.2 years ago madman@jimmy.harvard.edu ▴ 850
0
votes
3
replies
1.3k
views
package simpleaffy
Genetics affy simpleaffy Genetics affy simpleaffy
updated 20.1 years ago by ★ 3.9k • written 20.1 years ago by ▴ 20
0
votes
1
reply
1.4k
views
simpleaffy
simpleaffy simpleaffy
updated 20.1 years ago by ▴ 50 • written 20.1 years ago by ▴ 180
0
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3
replies
1.1k
views
phenoData
simpleaffy simpleaffy
20.1 years ago Simon Kidd ▴ 180
0
votes
6
replies
1.9k
views
ReadAffy Error: new versions causing problems?
genefilter gcrma matchprobes simpleaffy affyio genefilter gcrma matchprobes simpleaffy
updated 16.9 years ago by ▴ 20 • written 16.9 years ago by ▴ 200
0
votes
1
reply
1.0k
views
Simple Affy
cdf affy simpleaffy cdf affy simpleaffy
updated 19.8 years ago by ★ 1.1k • written 19.8 years ago by ▴ 510
0
votes
1
reply
910
views
Anopheles/malaria Affy chips
affy simpleaffy affylmGUI affy simpleaffy affylmGUI
updated 19.9 years ago by ▴ 950 • written 19.9 years ago by ▴ 510
0
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1
reply
1.0k
views
quality control of affy Chips for miRNA
miRNA cdf affy simpleaffy affyQCReport affycoretools miRNA cdf affy simpleaffy
updated 13.2 years ago by 65k • written 13.2 years ago by ★ 1.5k
0
votes
7
replies
2.0k
views
simpleaffy error
simpleaffy simpleaffy
19.8 years ago kfbargad@lg.ehu.es ▴ 260
0
votes
0
replies
681
views
simpleaffy betacf error in 1.2.3
GO simpleaffy GO simpleaffy
19.7 years ago grandi folia ▴ 20
0
votes
1
reply
710
views
RE: BioC] simpleaffy betacf error in 1.2.3
GO simpleaffy GO simpleaffy
updated 19.7 years ago by ★ 1.1k • written 19.7 years ago by ▴ 20
0
votes
2
replies
1.1k
views
simpleaffy problem
probe simpleaffy probe simpleaffy
updated 19.7 years ago by ★ 1.1k • written 19.7 years ago by ▴ 380
0
votes
0
replies
659
views
Fw: Affy Bioconductor with Rat230_2 chips
Cancer affy simpleaffy PROcess Cancer affy simpleaffy PROcess
19.6 years ago Ali A. Pirani ▴ 10
0
votes
1
reply
760
views
problems using cdfenv
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
updated 19.5 years ago by 65k • written 19.5 years ago by ▴ 510
0
votes
0
replies
822
views
QC questions
zebrafish cdf makecdfenv simpleaffy zebrafish cdf makecdfenv simpleaffy
19.5 years ago Crispin Miller ★ 1.1k
0
votes
0
replies
860
views
QC stats plot
moe430a simpleaffy moe430a simpleaffy
19.4 years ago Crispin Miller ★ 1.1k
0
votes
1
reply
874
views
error in ygs98cdf environment?
Microarray simpleaffy Microarray simpleaffy
updated 19.4 years ago by ★ 1.1k • written 19.4 years ago by ▴ 300
0
votes
1
reply
946
views
QC stats plot
moe430a simpleaffy moe430a simpleaffy
updated 19.4 years ago by ★ 5.5k • written 19.4 years ago by ▴ 110
0
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0
replies
749
views
Detection p-values in simpleaffy
simpleaffy simpleaffy
19.4 years ago Crispin Miller ★ 1.1k
0
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0
replies
725
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Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
moe430a cdf simpleaffy moe430a cdf simpleaffy
19.3 years ago Dick Beyer ★ 1.4k
0
votes
0
replies
680
views
simpleaffy function detection.p.value - bug solved in version 2.10
probe simpleaffy probe simpleaffy
19.1 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
0
votes
0
replies
805
views
simpleaffy function detection.p.value (and affy function mas5call s?)
simpleaffy simpleaffy
19.1 years ago Christian.Stratowa@vie.boehringer-ingel… ▴ 270
0
votes
3
replies
1.1k
views
Error doing Mas5 calculation with Simpleaffy package
Yeast affy simpleaffy Yeast affy simpleaffy
updated 19.9 years ago by ★ 1.1k • written 20.0 years ago by ▴ 50
0
votes
1
reply
764
views
is yeast2cdf available?
Annotation yeast2 cdf simpleaffy Annotation yeast2 cdf simpleaffy
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 350
0
votes
6
replies
1.3k
views
problems using simpleaffy
probe simpleaffy probe simpleaffy
updated 19.1 years ago by ★ 7.4k • written 19.1 years ago by ▴ 510
0
votes
1
reply
859
views
Detection call for Hu6800
hu6800 probe simpleaffy hu6800 probe simpleaffy
updated 19.1 years ago by ▴ 270 • written 19.1 years ago by ▴ 280
0
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1
reply
1.1k
views
error with plot in simpleaffy
hgu133plus2 probe simpleaffy hgu133plus2 probe simpleaffy
19.0 years ago Larry La Pointe ▴ 60
0
votes
1
reply
1.1k
views
simpleAffy, custom chip error
Microarray Cancer cdf probe Biobase affy gcrma matchprobes simpleaffy Microarray Cancer
updated 18.9 years ago by ★ 1.1k • written 18.9 years ago by ▴ 10
0
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1
reply
1.1k
views
justMAS and mas5
hgu133a cdf simpleaffy hgu133a cdf simpleaffy
updated 18.8 years ago by ★ 1.1k • written 18.8 years ago by ▴ 30
0
votes
4
replies
1.3k
views
error with results.summary in simpleaffy
Annotation Cancer hgu133a probe simpleaffy Annotation Cancer hgu133a probe simpleaffy
updated 18.8 years ago by ▴ 160 • written 18.8 years ago by ★ 1.1k
0
votes
0
replies
687
views
simpleaffy qc probes ratio
cdf graph simpleaffy cdf graph simpleaffy
18.8 years ago Paul.Delmar@serono.com ▴ 10
0
votes
0
replies
852
views
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
18.8 years ago Dick Beyer ★ 1.4k
0
votes
1
reply
1.1k
views
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
GO moe430a cdf reposTools limma gcrma matchprobes siggenes simpleaffy GO moe430a cdf
updated 18.8 years ago by ★ 1.4k • written 18.8 years ago by ★ 1.1k
0
votes
0
replies
589
views
justMAS for macs in simpleaffy package
simpleaffy simpleaffy
18.8 years ago Eitan Halper-Stromberg ▴ 30
0
votes
0
replies
609
views
Error in qc.affy(unnormalised, ...) : I'm sorry, I, do not know about chip type: moe430acdf
limma gcrma matchprobes simpleaffy limma gcrma matchprobes simpleaffy
18.8 years ago Dan Frampton ▴ 10
0
votes
2
replies
1.1k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 18.8 years ago by ▴ 780 • written 18.8 years ago by ★ 1.4k
0
votes
1
reply
1.2k
views
zebrafish simpleaffy Error in FUN(X[[4]], ...) : subscript out of bounds
zebrafish cdf probe reposTools gcrma matchprobes simpleaffy zebrafish cdf probe gcrma
updated 18.8 years ago by ★ 1.4k • written 18.8 years ago by ★ 1.1k
0
votes
0
replies
1.0k
views
affy and simpleaffy error
probe affy simpleaffy probe affy simpleaffy
18.7 years ago Narendra Kaushik ▴ 150
0
votes
2
replies
992
views
SimpleAffy: problem with Yeast Genome 2.0 Array
Yeast cdf simpleaffy Yeast cdf simpleaffy
updated 18.5 years ago by ★ 2.2k • written 18.5 years ago by ▴ 170
0
votes
0
replies
941
views
Error in qc.affy(unnormalised, ...) : I'm sorry, I do not know about chip type: moe430acdf
moe430a cdf simpleaffy moe430a cdf simpleaffy
19.3 years ago Crispin Miller ★ 1.1k
50 results • Page 1 of 1
Recent ...
Replies
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by marka • 0
As a single dad in Australia, finding time to unwind is rare, but [Lincoln Casino][1] has become my go-to escape after putting the kids to …
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Comment: get BM error by Fara • 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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