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simulation
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957
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Any pointers on simulating cell outliers?
splatter
simulation
5.9 years ago
luke.zappia
▴ 50
0
votes
0
replies
1.1k
views
Job:
Post-doc in mathematical modeling on phenotypic evolution and embryonic development
job
computational biology
simulation
evolution
Gene network
Job
6.7 years ago
isaac.salazar
• 0
0
votes
0
replies
1.1k
views
Polyester - creating simulated reads based on raw count matrix
polyester
rnaseq
simulation
6.7 years ago
sseo2
• 0
0
votes
0
replies
1.1k
views
Job:
postdoctoral position in Computational Biology/Statistics/Evolutionary Biology in Madrid, Spain
bioconductor
R
jobs
C++
simulation
Job
7.3 years ago
Ramon Diaz-Uriarte
▴ 70
0
votes
0
replies
969
views
Could an experienced user of Polyester help me with some questions?
rna-seq
polyester
simulation
time course
6.3 years ago
fa.gholizadeh89
• 0
0
votes
2
replies
1.5k
views
RNA-seq read simulation for benchmarking differential expression/splicing variance
polyester
simulation
RNA-seq
syntheticdata
updated 3.4 years ago by
Gordon Smyth
50k • written 3.4 years ago by
Endre Sebestyén
▴ 70
0
votes
2
replies
1.4k
views
How to simulate a count matrix using Polyester
simulation
count matrix
RNA-seq
Polyester
updated 6.3 years ago by
Alyssa Frazee
▴ 210 • written 6.3 years ago by
fa.gholizadeh89
• 0
7 results • Page
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Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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