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differential expression for Single-cell RNAseq data using edgeR
edgeR
single
scRNAseq
2.8 years ago • updated 2.6 years ago
mbenegas
• 0
2
votes
7
replies
2.6k
views
How to run runNMF in parallel?
scater
single
SingleCellExperiment
updated 2.4 years ago by
Aaron Lun
★ 28k • written 3.5 years ago by
p.joshi
▴ 40
1
vote
3
replies
2.5k
views
Unable to GetGRangesFromEnsDb
single
GenomeInfoDb
updated 16 months ago by
Yichao
• 0 • written 2.3 years ago by
Francesco Monticolo
• 0
5
votes
4
replies
1.8k
views
Technical normalization of single channel array data with Limma?
limma
single
genepix
normalization
technical
8.6 years ago
dario.veneziano
• 0
0
votes
1
reply
1.2k
views
Diagnostic plots for single-channel custom array with limma.
limma
custom
diagnostic plots
single
updated 8.6 years ago by
Gordon Smyth
50k • written 8.6 years ago by
dario.veneziano
• 0
1
vote
1
reply
1.1k
views
scran computeSumFactors showing error
scran
single
cell
updated 2.4 years ago by
Aaron Lun
★ 28k • written 2.4 years ago by
hemantcnaik
• 0
6 results • Page
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Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
How am i making the data? I am using the DESeq2 output data which I had generated
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
by
Michael Love
41k
Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …
Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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