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Answer: rtracklayer S.h by James W. MacDonald 59k
You should get the dockerfile from [Bioconductor][1]. [1]: http://www.bioconductor.org/help/docker/
Answer: HTSeq Counts no longer available by j.arizanova19 • 0
Hi, can I ask a follow up question as I am facing exactly the same issue... The "STAR - Counts" workflow seems to generate augmented_star_g…
Comment: AssignChromosomeRegion not working in Rstudio 4.2 by Ou, Jianhong ★ 1.3k
Hi Abhilansh, Thank you for trying ChIPpeakAnno for your data. Could you please edit your post again? I am not sure I can follow your desc…
Comment: Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with o by James W. MacDonald 59k
Please don't add comments onto years-old posts. Instead make a new post.
Comment: strange results from differential methylation analysis using limma by Sean Davis 21k
You should ask a new question, but the short answer is that features such as CpG probes are in rows.
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HTSeq Counts no longer available
Comment: Problem converting transcript to genomic coordinates with Annotation Hub
Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU
C: Appropriate pre-processing pipeline for Human Transcriptome Array HTA 2.0 with o
Comment: Diffbind dba$binding slot finding Chr21 for an MM10 dataset
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