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biocparallel slurm

updated 8.5 years ago by Valerie Obenchain ★ 6.8k • written 8.5 years ago by mertes • 0

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Slurm Subread

updated 2.0 years ago by ATpoint ★ 4.0k • written 2.0 years ago by sha-ked • 0

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copywriter slurm openMPI

updated 8.2 years ago by t.kuilman ▴ 170 • written 8.2 years ago by smcnulty • 0

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methylation epigenomics slurm mpi methylmix

updated 3.7 years ago by Kevin Blighe ★ 3.9k • written 3.7 years ago by parra.sev ▴ 20

4 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0

Hello James, Thank you for your answer and precise exemple ! It is disappointing but makes sense. Best, Alexandre

Comment: How to retrieve gene ontology GO class from gene list? by James W. MacDonald 65k

Yes. The `keys` argument to both `select` and `mapIds` will accept a vector (see `?select` for more information). Also, the [vignette][1] f…

Comment: How to retrieve gene ontology GO class from gene list? by bandconductor • 0

Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…

Votes

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

C: null model and DEXSeqDataSet object in DEXSEQ

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Scholar to James W. MacDonald 65k

Supporter to JKim • 0