Bioconductor Smallrna

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1.2k

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smallrna counts

7.6 years ago ribioinfo ▴ 100

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1.9k

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TMM deseq2 smallrna rnaseq

updated 5.4 years ago by António Miguel de Jesus Domingues ▴ 490 • written 5.4 years ago by Konstantinos Yeles ▴ 80

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1.8k

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Transcription Sequencing miRNA SmallRNA Annotation Normalization GO Cancer Organism edgeR

updated 11.6 years ago by Steve Lianoglou ★ 13k • written 11.6 years ago by Weng Khong LIM ▴ 10

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1.6k

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Sequencing SmallRNA Microarray limma Sequencing SmallRNA Microarray limma

updated 9.7 years ago by James W. MacDonald 65k • written 9.7 years ago by Jakub Stanislaw Nowak ▴ 70

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2.0k

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Sequencing miRNA SmallRNA DESeq Sequencing miRNA SmallRNA DESeq

updated 13.4 years ago by Wolfgang Huber ★ 13k • written 13.4 years ago by Wu, Xiwei ▴ 350

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1.9k

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Sequencing SmallRNA edgeR Sequencing SmallRNA edgeR

updated 11.6 years ago by Mark Robinson ▴ 880 • written 11.6 years ago by Danie ▴ 40

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917

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counts SmallRNA Normalization

updated 2.4 years ago by hauken_heyken ▴ 80 • written 2.5 years ago by k___ ▴ 30

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687

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SmallRNA DESeq2

21 months ago jucosie • 0

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662

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DESeq2 SmallRNA

updated 8 weeks ago by Michael Love 41k • written 9 weeks ago by r.r.bioinf • 0

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1.4k

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matrix DESeq2 SmallRNA dimensions small

2.6 years ago andreia ▴ 10

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1.2k

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mirna riboseq smallrna differential gene expression Job

6.1 years ago Andy Lynch ▴ 120

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1.1k

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cancer sequencing rnaseq methylation smallrna Job

5.8 years ago Andy Lynch ▴ 120

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2.1k

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deseq2 normalization smallrna ribosomal rna

7.5 years ago mosharrofgeb ▴ 10

13 results • Page 1 of 1

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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

Are you commenting on the OP's question, or adding a different question? If the latter, please start a new post rather than piggybacking on…

Answer: Math expression in shapeCustom legend in EnhancedVolcano by James W. MacDonald 65k

Use `bquote`. See section 4.6 in [the vignette][1]. [1]: https://bioconductor.org/packages/release/bioc/vignettes/EnhancedVolcano/in…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

I was thinking about removing unwanted variations at the sample level (ie a transformation shared across genes) not at the gene level. Corr…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by James W. MacDonald 65k

That's an assumption used for normalization of a sample, not an assumption you can use for an individual model. We always normalize to atte…

Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by SamGG ▴ 350

Is useless the assumption that the majority of genes have no variation in expression (bearing in mind that they are distributed over the en…

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biomaRt error: database disk image is malformed

Comment: biomaRt : No lock file for BiocFileCache

Answer: Cross-species analysis - how to compute the mid parent value?

Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2

Awards • All

Scholar to James W. MacDonald 65k

Supporter to JKim • 0