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smallrna
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2
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10
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2.1k
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DEseq normalization Small RNA-seq data using rRNA
deseq2
normalization
smallrna
ribosomal rna
7.5 years ago
mosharrofgeb
▴ 10
0
votes
1
reply
2.0k
views
DESeq with no replicates
Sequencing
miRNA
SmallRNA
DESeq
Sequencing
miRNA
SmallRNA
DESeq
updated 13.4 years ago by
Wolfgang Huber
★ 13k • written 13.4 years ago by
Wu, Xiwei
▴ 350
0
votes
1
reply
1.9k
views
Is normalization in edgeR required for small RNA sequencing data?
Sequencing
SmallRNA
edgeR
Sequencing
SmallRNA
edgeR
updated 11.6 years ago by
Mark Robinson
▴ 880 • written 11.6 years ago by
Danie
▴ 40
6
votes
7
replies
1.9k
views
Normalization for small non-coding RNA
TMM
deseq2
smallrna
rnaseq
updated 5.4 years ago by
António Miguel de Jesus Domingues
▴ 490 • written 5.4 years ago by
Konstantinos Yeles
▴ 80
0
votes
1
reply
1.8k
views
Bioconductor Digest, Vol 115, Issue 22
Transcription
Sequencing
miRNA
SmallRNA
Annotation
Normalization
GO
Cancer
Organism
edgeR
updated 11.6 years ago by
Steve Lianoglou
★ 13k • written 11.6 years ago by
Weng Khong LIM
▴ 10
0
votes
3
replies
1.6k
views
finding differential expression pattern between paired columns of data frame.
Sequencing
SmallRNA
Microarray
limma
Sequencing
SmallRNA
Microarray
limma
updated 9.7 years ago by
James W. MacDonald
65k • written 9.7 years ago by
Jakub Stanislaw Nowak
▴ 70
3
votes
7
replies
1.4k
views
small dimensions in the matrix of counts from smallRNA using DESEq2
matrix
DESeq2
SmallRNA
dimensions
small
2.6 years ago
andreia
▴ 10
2
votes
0
replies
1.2k
views
Job:
PhD Studentship - Investigating Regulation of Transcription and Translation in Prostate Cancer
mirna
riboseq
smallrna
differential gene expression
Job
6.1 years ago
Andy Lynch
▴ 120
0
votes
2
replies
1.2k
views
small RNAs quantification
smallrna
counts
7.6 years ago
ribioinfo
▴ 100
0
votes
0
replies
1.1k
views
Job:
Post-doc in Prostate Cancer Research (Statistics / Computational Biology) at University of St Andrews (+PhD position also available)
cancer
sequencing
rnaseq
methylation
smallrna
Job
5.8 years ago
Andy Lynch
▴ 120
0
votes
1
reply
914
views
small RNA counts
counts
SmallRNA
Normalization
updated 2.4 years ago by
hauken_heyken
▴ 80 • written 2.5 years ago by
k___
▴ 30
2
votes
2
replies
682
views
Contradictory results in smallRNA differential expression analysis using DESeq2
SmallRNA
DESeq2
20 months ago
jucosie
• 0
0
votes
13
replies
652
views
Unexpected behavior of lfcShrink() function in DESeq2 analysis
DESeq2
SmallRNA
updated 7 weeks ago by
Michael Love
41k • written 8 weeks ago by
r.r.bioinf
• 0
13 results • Page
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Answer: minfi::read.metharray.exp
by
Basti
▴ 770
Could you show `list.files("~/Users/clarachretienneau/Desktop/clock epigenetic/PJ1209132_ScanData")` ? There may be a problem related to th…
Comment: DESeq2 - dispersion estimation when there is none
by
WardDeb
• 0
Thank you for the pointers, I'll revert back again to the method section of the paper. As for the negative relationship of the estimated di…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
Gayatri
• 0
Hello James, How to generate the db? By running the makeOrgPackageFromNCBI() command? I have tried doing that, first by just deleting the …
Answer: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param
by
Tim Peters
▴ 170
Hi Jose and Russ, Apologies to Jose for not seeing this earlier. Sometimes the loess smoother in the bottom panel will throw this error …
Comment: Trying to use enrichGO
by
fernanda.backsouza
• 0
Sure, I changed it but still NULL G0 <- enrichGO( gene = ortologos_filtrados$Gene.ID, OrgDb = org.Cs.eg.db, keyType = "ENTREZID",…
Votes
Answer: DESeq2 - dispersion estimation when there is none
Comment: Cannabis and KEGGgraph
Comment: Cannabis and KEGGgraph
Answer: Cannabis and KEGGgraph
Answer: Differentially expressed genes in monocle pseudotime
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