Bioconductor Smallrna

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654

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DESeq2 SmallRNA

updated 7 weeks ago by Michael Love 41k • written 8 weeks ago by r.r.bioinf • 0

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683

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SmallRNA DESeq2

21 months ago • updated 20 months ago jucosie • 0

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914

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counts SmallRNA Normalization

updated 2.4 years ago by hauken_heyken ▴ 80 • written 2.5 years ago by k___ ▴ 30

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matrix DESeq2 SmallRNA dimensions small

2.6 years ago andreia ▴ 10

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1.9k

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TMM deseq2 smallrna rnaseq

updated 5.4 years ago by António Miguel de Jesus Domingues ▴ 490 • written 5.4 years ago by Konstantinos Yeles ▴ 80

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1.1k

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cancer sequencing rnaseq methylation smallrna Job

5.8 years ago Andy Lynch ▴ 120

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1.2k

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mirna riboseq smallrna differential gene expression Job

6.1 years ago Andy Lynch ▴ 120

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2.1k

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deseq2 normalization smallrna ribosomal rna

7.5 years ago mosharrofgeb ▴ 10

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1.2k

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smallrna counts

7.6 years ago ribioinfo ▴ 100

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1.6k

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Sequencing SmallRNA Microarray limma Sequencing SmallRNA Microarray limma

updated 9.7 years ago by James W. MacDonald 65k • written 9.7 years ago by Jakub Stanislaw Nowak ▴ 70

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1.8k

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Transcription Sequencing miRNA SmallRNA Annotation Normalization GO Cancer Organism edgeR

updated 11.6 years ago by Steve Lianoglou ★ 13k • written 11.6 years ago by Weng Khong LIM ▴ 10

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1.9k

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Sequencing SmallRNA edgeR Sequencing SmallRNA edgeR

updated 11.6 years ago by Mark Robinson ▴ 880 • written 11.6 years ago by Danie ▴ 40

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Sequencing miRNA SmallRNA DESeq Sequencing miRNA SmallRNA DESeq

updated 13.4 years ago by Wolfgang Huber ★ 13k • written 13.4 years ago by Wu, Xiwei ▴ 350

13 results • Page 1 of 1

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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs by Guangchuang Yu ★ 1.2k

an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.

Comment: Trying to use enrichGO by Guido Hooiveld ★ 3.9k

Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…

Comment: Different Shrunk Log2FC according with reference by andrebolerbarros ▴ 20

Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…

Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge by ATpoint ★ 4.0k

The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…

Answer: Different Shrunk Log2FC according with reference by ATpoint ★ 4.0k

Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…

Votes

C: SGSeq: moving toward diffex from SGSeq analysis

DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds

Subset DEXSeqDataSet In DEXSeq

How to get all possible comparisons in DiffBind

Comment: get BM error

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Scholar to ATpoint ★ 4.0k