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snapcgh
•
reset
0
votes
8
replies
2.0k
views
segmentation aCGH data
Normalization
CGH
probe
limma
DNAcopy
snapCGH
Normalization
CGH
probe
limma
DNAcopy
16.5 years ago
jhs1jjm@leeds.ac.uk
▴ 230
0
votes
7
replies
1.8k
views
segmentation for Affy SNP arrays
SNP
CGH
affy
GLAD
snapCGH
SNP
CGH
affy
GLAD
snapCGH
updated 16.6 years ago by
Rob Scharpf
▴ 250 • written 16.6 years ago by
Yu Chuan Tai
▴ 440
0
votes
2
replies
1.1k
views
snapCGH package not loaded
snapCGH
snapCGH
updated 14.2 years ago by
John Marioni
▴ 20 • written 14.2 years ago by
João Fadista
▴ 500
0
votes
2
replies
1.0k
views
snapCGH; export results of summarize.clones() function from aCGH
aCGH
convert
aCGH
snapCGH
aCGH
convert
aCGH
snapCGH
16.8 years ago
Ian Roberts
▴ 70
0
votes
2
replies
1.2k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH
Survival
Cancer
annotate
genefilter
affy
DNAcopy
aCGH
GLAD
tilingArray
snapCGH
updated 16.6 years ago by
J-C. Marioni
▴ 40 • written 16.6 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
7
replies
1.6k
views
processCGH in snapCGH package
CGH
snapCGH
CGH
snapCGH
updated 16.6 years ago by
Sean Davis
21k • written 16.6 years ago by
jhs1jjm@leeds.ac.uk
▴ 230
0
votes
2
replies
2.0k
views
FW: Cannot restore saved data in .Rdata after loading tilingArray - object 'breakpoints' not found
Cancer
Breast
PROcess
tilingArray
snapCGH
Cancer
Breast
PROcess
tilingArray
snapCGH
updated 17.7 years ago by
Wolfgang Huber
★ 13k • written 17.7 years ago by
Steven McKinney
▴ 310
2
votes
2
replies
1.3k
views
snapCGH segmentation fault
snapcgh
software error
updated 8.4 years ago by
Ramon Diaz-Uriarte
▴ 70 • written 8.4 years ago by
Tobias Schmidt
• 0
0
votes
1
reply
1.2k
views
How to use snapCGH with Nimblegen data
CGH
snapCGH
CGH
snapCGH
updated 17.5 years ago by
Steven McKinney
▴ 310 • written 17.5 years ago by
rdesprat
▴ 30
0
votes
1
reply
968
views
SnapCGH problem
Cancer
snapCGH
Cancer
snapCGH
17.2 years ago
Daniel Brewer
★ 1.9k
0
votes
4
replies
999
views
CGH HomHMM problem and how to debug
Cancer
snapCGH
Cancer
snapCGH
17.2 years ago
Daniel Brewer
★ 1.9k
0
votes
3
replies
1.2k
views
snapCGH: T instead of TRUE, etc
Cancer
snapCGH
Cancer
snapCGH
17.1 years ago
Ramon Diaz
★ 1.1k
0
votes
2
replies
944
views
snapCGH question
aCGH
aCGH
snapCGH
aCGH
aCGH
snapCGH
updated 17.0 years ago by
Sean Davis
21k • written 17.0 years ago by
Federico Abascal
▴ 90
0
votes
1
reply
1.3k
views
CGH analysis warning messages
Cancer
CGH
snapCGH
Cancer
CGH
snapCGH
updated 16.8 years ago by
Ian Roberts
▴ 70 • written 16.8 years ago by
Daniel Brewer
★ 1.9k
0
votes
4
replies
1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH
Survival
CGH
annotate
genefilter
affy
DNAcopy
aCGH
GLAD
tilingArray
snapCGH
aCGH
updated 16.6 years ago by
jhs1jjm@leeds.ac.uk
▴ 230 • written 16.6 years ago by
caiwei@mdanderson.org
▴ 110
0
votes
4
replies
1.2k
views
snapCGH_error in plotting segmentation
snapCGH
snapCGH
updated 15.6 years ago by
Sean Davis
21k • written 15.6 years ago by
Abhilash Venu
▴ 340
0
votes
1
reply
973
views
normexp error (while using snapCGH)
CGH
snapCGH
CGH
snapCGH
updated 15.6 years ago by
Artur Veloso
▴ 340 • written 15.6 years ago by
Abhilash Venu
▴ 340
0
votes
4
replies
1.4k
views
snapCGH fails in runBioHMM
aCGH
Microarray
TwoChannel
Cancer
limma
aCGH
snapCGH
aCGH
Microarray
TwoChannel
Cancer
updated 15.0 years ago by
Wolfgang Raffelsberger
▴ 160 • written 15.0 years ago by
Ramon Diaz
★ 1.1k
0
votes
5
replies
1.9k
views
snapCGH, runBioHMM, Error: segfault from C stack overflow
snapCGH
snapCGH
updated 14.1 years ago by
Seth Falcon
▴ 150 • written 14.1 years ago by
Ivanek, Robert
▴ 100
0
votes
2
replies
1.5k
views
Nimblegen CGH ringo to snapCGH
CGH
snapCGH
Ringo
CGH
snapCGH
Ringo
updated 14.0 years ago by
Joern Toedling
▴ 450 • written 14.0 years ago by
Chris Fenton
▴ 80
0
votes
1
reply
1.6k
views
how to import Agilent CGH custom design xml file into limma
aCGH
CGH
probe
aCGH
snapCGH
aCGH
CGH
probe
aCGH
snapCGH
updated 13.5 years ago by
Sean Davis
21k • written 13.5 years ago by
Jarek Bryk
▴ 110
0
votes
1
reply
895
views
snapCGH doesn't work: unable to load shared library ...
snapCGH
snapCGH
updated 13.2 years ago by
Martin Morgan
25k • written 13.2 years ago by
Gregory Gentlemen
▴ 20
0
votes
1
reply
1.5k
views
Question regarding the use of the snapCGH package to analyze aCGH data obtained from TCGA
Microarray
Annotation
CGH
snapCGH
Microarray
Annotation
CGH
snapCGH
updated 9.7 years ago by
Sean Davis
21k • written 9.7 years ago by
Guest User
★ 13k
0
votes
0
replies
834
views
problem with readPositionalInfo() for Nimblegen for ArrayCGH
snapCGH
cghMCR
snapCGH
cghMCR
12.8 years ago
Muksitul Haque
▴ 10
0
votes
0
replies
1.0k
views
general CGH threshold question
aCGH
CGH
aCGH
GLAD
snapCGH
aCGH
CGH
aCGH
GLAD
snapCGH
14.7 years ago
Wolfgang RAFFELSBERGER
▴ 140
0
votes
0
replies
1.0k
views
problems with snapCGH readPositionalInfo processCGH
CGH
snapCGH
CGH
snapCGH
14.6 years ago
Dick Beyer
★ 1.4k
0
votes
0
replies
940
views
snapCGH and processCGH
snapCGH
snapCGH
14.6 years ago
lakshmi dhevi
▴ 10
0
votes
0
replies
778
views
snapCGH - could not find function "readPositionalInfo"
GUI
snapCGH
GUI
snapCGH
14.5 years ago
Kristian Almstrup
▴ 10
0
votes
0
replies
1.1k
views
DNAcopy
aCGH
impute
DNAcopy
aCGH
snapCGH
CGHcall
aCGH
impute
DNAcopy
aCGH
snapCGH
CGHcall
14.2 years ago
Daniel Rico
▴ 110
0
votes
0
replies
742
views
aCGH package analysis - duplicate spot averaging problem
aCGH
aCGH
snapCGH
aCGH
aCGH
snapCGH
16.8 years ago
Ian Roberts
▴ 70
0
votes
0
replies
844
views
snapCGH and clonesinfo
CGH
limma
snapCGH
CGH
limma
snapCGH
10.9 years ago
Juliet Hannah
▴ 360
0
votes
0
replies
676
views
snapCGH package for expression data?
aCGH
Organism
aCGH
snapCGH
aCGH
Organism
aCGH
snapCGH
16.6 years ago
Lyudmila Mikhaylova
▴ 20
0
votes
0
replies
1.2k
views
readPositionalInfo in snapCGH for preparing CNA files for DNAcopy
aCGH
DNAcopy
aCGH
snapCGH
aCGH
DNAcopy
aCGH
snapCGH
10.8 years ago
Guest User
★ 13k
0
votes
0
replies
822
views
Converting Seglist to segments file
Cancer
convert
DNAcopy
snapCGH
cghMCR
Cancer
convert
DNAcopy
snapCGH
cghMCR
16.8 years ago
Daniel Brewer
★ 1.9k
0
votes
0
replies
847
views
problem with analyzing human 244k agilent array with snapCGH
Annotation
Cancer
snapCGH
Annotation
Cancer
snapCGH
16.1 years ago
Sean Davis
21k
0
votes
0
replies
829
views
snapCGH and Nimblegen arrays
Cancer
snapCGH
Cancer
snapCGH
16.0 years ago
Gareth Wilson
▴ 10
0
votes
0
replies
1.1k
views
analysing NimbleGen CGH for CNV
aCGH
probe
aCGH
snapCGH
Ringo
aCGH
probe
aCGH
snapCGH
Ringo
13.4 years ago
Adeolu Adewoye
▴ 40
0
votes
0
replies
915
views
Get data frame of CNV calls from Seglist object
seglist
snapcgh
dnacopy
8.7 years ago
Cian Murphy
▴ 40
0
votes
0
replies
686
views
snapCGH plotting
GO
graph
snapCGH
GO
graph
snapCGH
14.7 years ago
Boris Umylny
▴ 120
0
votes
0
replies
751
views
error in runBioHMM() (package snapCGH)
CGH
snapCGH
CGH
snapCGH
15.0 years ago
Wolfgang Raffelsberger
▴ 160
40 results • Page
1 of 1
Recent ...
Replies
Comment: get BM error
by
Fara
• 0
Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…
Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
by
James W. MacDonald
65k
That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…
Answer: get BM error
by
James W. MacDonald
65k
The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
Answer: How to retrieve gene ontology GO class from gene list?
by
James W. MacDonald
65k
You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages. ``` > library(GO.db) > library(org.Hs.eg.db) > go <- m…
Comment: Different Shrunk Log2FC according with reference
by
Michael Love
41k
I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow. An…
Votes
Answer: get BM error
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
Comment: Different Shrunk Log2FC according with reference
Reproducibility issue with scran together with lapply and BiocParallel
C: SGSeq: moving toward diffex from SGSeq analysis
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