Showing : snpStats • reset
0
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4
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1.5k
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snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 12.1 years ago by ▴ 20 • written 12.1 years ago by ▴ 30
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3
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1.1k
views
SNPstats package bug report
snpStats snpStats
10.4 years ago Guest User ★ 13k
0
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3
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2.8k
views
GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 11.9 years ago by 6.7k • written 11.9 years ago by ▴ 20
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3
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1.6k
views
Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 10.3 years ago by 6.7k • written 10.3 years ago by ▴ 50
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2
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1.4k
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Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats snpStats
updated 12.5 years ago by 25k • written 12.5 years ago by ★ 4.2k
1
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2
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1.8k
views
Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
9.2 years ago remi.tournebize ▴ 10
1
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2
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1.3k
views
Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld() snpStats
2.4 years ago Anastasiia • 0
0
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1
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1.6k
views
[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
10.4 years ago David Winsemius ▴ 40
1
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1
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1.6k
views
Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
8.4 years ago TimothéeFlutre ▴ 80
0
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1
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1.3k
views
snpStats --- MAF in Pedigrees
snpStats snpStats
updated 11.3 years ago by 6.7k • written 11.3 years ago by ▴ 60
1
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1
reply
1.2k
views
reading ped error when using the snpStats library
snpstats ped file R
6.5 years ago kzelaya2 ▴ 10
0
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1
reply
925
views
GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
5.8 years ago GENOMIC_region • 0
0
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1
reply
1.3k
views
snp analysis GWAS
snpstats
updated 9.4 years ago by ★ 13k • written 9.4 years ago by • 0
0
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1
reply
1.4k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 11.1 years ago by 6.7k • written 11.1 years ago by ▴ 10
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1
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1.6k
views
snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 9.9 years ago by 6.7k • written 9.9 years ago by ★ 13k
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0
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602
views
Coercion of a numeric matrix into a SnpMatrix
snpStats
4.2 years ago schandry • 0
0
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0
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1.8k
views
snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
10.6 years ago Stephanie M. Gogarten ▴ 870
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0
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1.1k
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snpStats Fst Implementation
snpStats snpStats
10.6 years ago Voke AO ▴ 760
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0
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2.0k
views
Plink Data for Fst Calculations
snpStats snpStats
10.4 years ago Voke AO ▴ 760
0
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0
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1.0k
views
statistics from snpStats objects
SNP snpStats SNP snpStats
11.9 years ago james power ▴ 10
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0
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997
views
Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
9.5 years ago vickygarfield87 • 0
0
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0
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1.7k
views
(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error snpStats
9.5 years ago vickygarfield87 • 0
0
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0
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726
views
Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
3.1 years ago Amber • 0
1
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0
replies
1.0k
views
Error when computing ld with snpStats in big samples
software error snpstats `ld
7.9 years ago carlos.ruiz • 0
0
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0
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1.0k
views
snp.rhs.estimates and/or .tests and extracting results
snpStats additive model
7.1 years ago natalie.jean.mcdonald • 0
25 results • Page 1 of 1
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2 by Alexandre • 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
Comment: Reproducibility issue with scran together with lapply and BiocParallel by ATpoint ★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by winwater0928 • 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel by Aaron Lun ★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
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C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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