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Comment: featureCounts: 0% successfully assigned fragments by ATpoint ★ 1.2k

Lack of any details, not appreciated. Anyway, are chromosome identifiers the same between BAM and GTF?

Comment: strange results from differential methylation analysis using limma by nabiyogesh ▴ 10

Could you please help me how to make Methylation data input file like should I take CpG probes as rows or column? Many thanks

Comment: Ensembl plants at annotationHub? by karenserrano • 0

Hi Johannes, Could I request the same EnsDb creation for Medicago truncatula? Thank you very much, Karen

Answer: EnrichGO not working with db created from annotationhub by Guido Hooiveld ★ 3.2k

Did you notice the first message that was returned after you ran `enrichGO()`? Thus: `--> No gene can be mapped....` This basically means…

Comment: DiffBind GreyListChIP error: Error: BiocParallel errors by ksong • 0

Hello my friends, I have exactly the same issue. May I ask if you have already solve this problem? I have tried `library(BiocParallel) regi…

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