Showing : snplocs • reset
0
votes
4
replies
2.5k
views
how to modify a Biostrings object
SNPlocs SNPlocs
updated 15.2 years ago by 16k • written 15.2 years ago by ★ 1.1k
0
votes
6
replies
2.2k
views
dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617
SNP Cancer SNPlocs SNP Cancer SNPlocs
updated 8.8 years ago by • 0 • written 14.9 years ago by 16k
1
vote
6
replies
2.3k
views
Good way to get location of in-del SNPs in UCSC coordinates?
snplocs snp
9.4 years ago garrisrg ▴ 10
0
votes
7
replies
1.7k
views
Probe ID to Sequence
SNPlocs GenomicRanges SNPlocs GenomicRanges
updated 12.7 years ago by ★ 4.2k • written 12.7 years ago by ▴ 400
0
votes
3
replies
1.9k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
updated 10.2 years ago by ▴ 20 • written 10.2 years ago by ★ 4.2k
0
votes
2
replies
1.6k
views
using snpid2grange() and/or rsidsToGRanges() for rsid lists with missing
SNPlocs
updated 9.5 years ago by 6.7k • written 9.5 years ago by ▴ 20
0
votes
3
replies
1.4k
views
predictCoding() return empty Granges
Annotation Cancer Arabidopsis thaliana BSgenome SNPlocs TranscriptDb BSgenome Annotation
updated 11.5 years ago by 16k • written 11.5 years ago by ▴ 100
0
votes
4
replies
1.4k
views
Finding coding SNPs with predictCoding
SNP VariantAnnotation BSgenome SNPlocs BSgenome VariantAnnotation SNP VariantAnnotation
updated 12.1 years ago by ★ 6.8k • written 12.2 years ago by ▴ 650
0
votes
1
reply
1.1k
views
custom SNPlocs / BSgenome package
SNP Annotation Organism Homo sapiens BSgenome SNPlocs BSgenome SNP Annotation Organism
updated 12.4 years ago by 16k • written 12.4 years ago by ▴ 100
0
votes
3
replies
1.8k
views
RE : maping SNPs
SNP Annotation Cancer SNPlocs TranscriptDb GenomicFeatures GenomicRanges SNP Annotation
updated 12.2 years ago by 16k • written 12.2 years ago by ▴ 450
0
votes
1
reply
1.1k
views
SNPlocs package for dbSNP 135
Cancer SNPlocs Cancer SNPlocs
updated 8.7 years ago by • 0 • written 12.2 years ago by 16k
0
votes
3
replies
1.5k
views
Strand information for dbSNP packages
SNPlocs safe SNPlocs safe
updated 12.1 years ago by ★ 6.8k • written 12.1 years ago by ▴ 650
0
votes
4
replies
1.5k
views
GGtools: transScores function returning cis eQTL
SNP Annotation probe SNPlocs GGtools SNP Annotation probe SNPlocs GGtools
updated 11.5 years ago by 6.7k • written 11.5 years ago by ★ 13k
0
votes
4
replies
2.0k
views
predictCoding() return empty Granges
Annotation Cancer Arabidopsis thaliana BSgenome SNPlocs TranscriptDb BSgenome Annotation
updated 11.5 years ago by 16k • written 11.5 years ago by ▴ 100
0
votes
1
reply
96
views
SNP locus package for mouse?
SNPlocs packFinder
updated 3 days ago by 65k • written 6 days ago by • 0
0
votes
3
replies
1.0k
views
other human genomes, other SNP sets?
Sequencing BSgenome SNPlocs BSgenome Sequencing BSgenome SNPlocs BSgenome
15.1 years ago Paul Shannon ★ 1.1k
0
votes
1
reply
2.7k
views
How to find SNP names
SNP Homo sapiens SNPlocs SNP Homo sapiens SNPlocs
updated 14.9 years ago by 16k • written 14.9 years ago by ▴ 90
0
votes
3
replies
986
views
Fwd: cannot install SNPlocs.Hsapiens.dbSNP.20090506
SNPlocs SNPlocs
updated 14.3 years ago by ▴ 70 • written 14.3 years ago by 21k
0
votes
2
replies
1.3k
views
New SNPlocs data package for Human (dbSNP BUILD 131)
Cancer BSgenome SNPlocs BSgenome Cancer BSgenome SNPlocs BSgenome
14.0 years ago Hervé Pagès 16k
0
votes
2
replies
1.2k
views
seqnames on dbSNP object error
SNPlocs SNPlocs
updated 13.0 years ago by 16k • written 13.0 years ago by ▴ 910
0
votes
6
replies
1.4k
views
SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)
Regression SNPlocs Biostrings Regression SNPlocs Biostrings
updated 12.6 years ago by 6.7k • written 12.6 years ago by ★ 4.2k
0
votes
1
reply
1.4k
views
Does liftOver work for SNPs mapping to different chr between different builds
SNP GO Cancer SNPlocs rtracklayer SNP GO Cancer SNPlocs rtracklayer
updated 12.5 years ago by ★ 11k • written 12.5 years ago by ★ 1.0k
0
votes
4
replies
1.7k
views
IlluminaHumanMethylation450kprobe for nearest TSS calculation question
Annotation BSgenome SNPlocs BSgenome Annotation BSgenome SNPlocs BSgenome
updated 11.1 years ago by ★ 4.2k • written 11.1 years ago by ★ 13k
0
votes
2
replies
3.6k
views
From location to get the SNP rs ID
SNP Cancer SNPlocs ASSIGN SNP Cancer SNPlocs ASSIGN
updated 10.9 years ago by 16k • written 10.9 years ago by ▴ 970
0
votes
1
reply
1.4k
views
Question about MEDIPS extend parameter : RE: Success: RE: Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome MEDIPS
updated 10.3 years ago by ▴ 240 • written 10.3 years ago by 16k
0
votes
1
reply
955
views
custom variant AnnotationDbi?
Annotation SNPlocs Annotation SNPlocs
updated 10.6 years ago by 6.7k • written 10.6 years ago by ▴ 380
0
votes
2
replies
1.5k
views
VCF as custom variant annotation database
Annotation SNPlocs Annotation SNPlocs
updated 10.3 years ago by ★ 6.8k • written 10.3 years ago by ▴ 380
0
votes
2
replies
1.5k
views
injectSNPS only for common variants
snp snplocs
updated 7.5 years ago by ★ 3.2k • written 7.5 years ago by • 0
3
votes
4
replies
1.4k
views
How often are SNPlocs.Hsapiens.dbSNP-* packages released? and why that time scale?
SNPlocs SNP dbsnp
7.2 years ago Ramiro Magno ▴ 100
0
votes
1
reply
1.1k
views
3.7 behaviour change with snplocs snpsById?
software error snplocs gpos
updated 5.9 years ago by 16k • written 5.9 years ago by • 0
1
vote
3
replies
563
views
Using injectSNPs with a custom set of SNPs
SNPlocs BSgenome
written 6 months ago by • 0
0
votes
2
replies
1.5k
views
RE : RE : maping SNPs
SNP SNPlocs TranscriptDb IRanges GenomicFeatures SNP SNPlocs TranscriptDb IRanges
updated 13.3 years ago by ★ 6.8k • written 13.3 years ago by ▴ 450
0
votes
3
replies
1.9k
views
Problem locating SNP by rsID for SNPlocs.Hsapiens.dbSNP.20120608 package Bioconductor x
SNP SNPlocs SNP SNPlocs
updated 11.3 years ago by 16k • written 11.3 years ago by ▴ 40
0
votes
0
replies
958
views
Problem locating SNP by rsID for SNPlocs.Hsapiens.dbSNP.20120608 package
SNP SNPlocs SNP SNPlocs
11.3 years ago Christina Chaivorapol ▴ 40
0
votes
0
replies
1.5k
views
minfi release 1.8
SNP Annotation GO probe SNPlocs PROcess minfi bumphunter ChAMP SNP Annotation GO probe
9.9 years ago swarmqq@gmail.com ▴ 10
0
votes
0
replies
1.4k
views
About the bioconductor package SNPlocs.Hsapiens.dbSNP.20071016.
SNP Cancer SNPlocs SNP Cancer SNPlocs
15.2 years ago Hervé Pagès 16k
0
votes
0
replies
1.7k
views
RE : maping SNPs; first foundation challenge offered
SNP Annotation Cancer SNPlocs TranscriptDb biomaRt GenomicFeatures SNP Annotation Cancer
13.3 years ago Vincent J. Carey, Jr. 6.7k
0
votes
1
reply
424
views
Could not find XtraSNPlocs.Hsapiens.dbSNP155.GRCh37/GRCh38 packages
XtraSNPlocs SNPlocs
updated 15 months ago by ★ 4.0k • written 15 months ago by ▴ 20
0
votes
0
replies
1.9k
views
Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome GO
10.4 years ago Hervé Pagès 16k
1
vote
0
replies
787
views
News: BSgenome package for T2T-CHM13v2.0 assembly and SNPlocs package for dbSNP155
BSgenome dbSNP T2T-CHM13v2.0 SNPlocs
2.0 years ago Hervé Pagès 16k
0
votes
0
replies
2.1k
views
BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
GO Cancer BSgenome OrganismDb SNPlocs TranscriptDb Biostrings BSgenome rtracklayer MEDIPS
10.4 years ago Hervé Pagès 16k
0
votes
0
replies
644
views
how to construct a SNPlocs-class by myself
BSgenome SNPlocs
3.0 years ago Guandong Shang ▴ 40
0
votes
0
replies
1.2k
views
dbSNP strand information
SNPlocs safe SNPlocs safe
12.1 years ago Alex Gutteridge ▴ 650
43 results • Page 1 of 1
Recent ...
Replies
Answer: Cannabis and KEGGgraph by deeenes ▴ 30
Hello, I'm a developer of the `OmnipathR` package, and I wrote [a function][1] to access certain KEGG data: library(OmnipathR) cs…
Answer: RNAseq:Technical replicates from different batches by Gordon Smyth 50k
I am not entirely clear what you mean by "technical" replicates in this case. Are they resequencing of the same RNA samples or are they fre…
Comment: DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, param by russ.bainer ▴ 10
Hi, I'm hitting this too. As far as I can tell my DataTrack is fine, but perhaps I am missing something. Notably the same code works on o…
Comment: The difference when using Limma compare between 3 conditions vs 2 conditions by Chris • 0
Hi Robert, If I don't want to use all pathway in c2 gene set but only a few pathways of interested, how can I do that? So we try to get a …
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Awards • All
Popular Question to James W. MacDonald 65k
Popular Question to shepherl 3.8k
Popular Question to BioinfGuru ▴ 30
Popular Question to Gordon Smyth 50k
Scholar to Peter Hickey ▴ 740
Locations • All
France, 9 minutes ago
United States, 34 minutes ago
WEHI, Melbourne, Australia, 46 minutes ago
Vietnam, 59 minutes ago
United States, 1 hour ago
Traffic: 493 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6