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Showing :
snplocs
•
reset
1
vote
3
replies
531
views
Using injectSNPs with a custom set of SNPs
SNPlocs
BSgenome
written 5 months ago by
Stevie Pederson
• 0
0
votes
1
reply
405
views
Could not find XtraSNPlocs.Hsapiens.dbSNP155.GRCh37/GRCh38 packages
XtraSNPlocs
SNPlocs
updated 14 months ago by
ATpoint
★ 4.0k • written 15 months ago by
Mario Saare
▴ 20
1
vote
0
replies
753
views
News:
BSgenome package for T2T-CHM13v2.0 assembly and SNPlocs package for dbSNP155
BSgenome
dbSNP
T2T-CHM13v2.0
SNPlocs
23 months ago
Hervé Pagès
16k
0
votes
0
replies
626
views
how to construct a SNPlocs-class by myself
BSgenome
SNPlocs
3.0 years ago
Guandong Shang
▴ 40
0
votes
1
reply
1.1k
views
3.7 behaviour change with snplocs snpsById?
software error
snplocs
gpos
updated 5.8 years ago by
Hervé Pagès
16k • written 5.9 years ago by
j.abbott
• 0
3
votes
4
replies
1.4k
views
How often are SNPlocs.Hsapiens.dbSNP-* packages released? and why that time scale?
SNPlocs
SNP
dbsnp
7.1 years ago
Ramiro Magno
▴ 100
0
votes
2
replies
1.5k
views
injectSNPS only for common variants
snp
snplocs
updated 7.4 years ago by
Robert Castelo
★ 3.1k • written 7.4 years ago by
arubio
• 0
0
votes
1
reply
1.1k
views
SNPlocs package for dbSNP 135
Cancer
SNPlocs
Cancer
SNPlocs
updated 8.6 years ago by
genefan
• 0 • written 12.1 years ago by
Hervé Pagès
16k
0
votes
6
replies
2.2k
views
dbSNP build for R package SNPlocs.Hsapiens.dbSNP.20080617
SNP
Cancer
SNPlocs
SNP
Cancer
SNPlocs
updated 8.7 years ago by
genefan
• 0 • written 14.8 years ago by
Hervé Pagès
16k
1
vote
6
replies
2.3k
views
Good way to get location of in-del SNPs in UCSC coordinates?
snplocs
snp
9.3 years ago
garrisrg
▴ 10
0
votes
2
replies
1.6k
views
using snpid2grange() and/or rsidsToGRanges() for rsid lists with missing
SNPlocs
updated 9.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 9.5 years ago by
k.askland
▴ 20
0
votes
0
replies
1.4k
views
minfi release 1.8
SNP
Annotation
GO
probe
SNPlocs
PROcess
minfi
bumphunter
ChAMP
SNP
Annotation
GO
probe
9.9 years ago
swarmqq@gmail.com
▴ 10
0
votes
3
replies
1.9k
views
minfi release 1.8
SNP
Annotation
GO
probe
SNPlocs
PROcess
minfi
bumphunter
ChAMP
SNP
Annotation
GO
probe
updated 10.1 years ago by
Smeeta Shrestha
▴ 20 • written 10.2 years ago by
Tim Triche
★ 4.2k
0
votes
2
replies
1.5k
views
VCF as custom variant annotation database
Annotation
SNPlocs
Annotation
SNPlocs
updated 10.2 years ago by
Valerie Obenchain
★ 6.8k • written 10.2 years ago by
Lescai, Francesco
▴ 380
0
votes
1
reply
1.4k
views
Question about MEDIPS extend parameter : RE: Success: RE: Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation
GO
Cancer
BSgenome
OrganismDb
SNPlocs
TranscriptDb
Biostrings
BSgenome
MEDIPS
updated 10.3 years ago by
Matthias Lienhard
▴ 240 • written 10.3 years ago by
Hervé Pagès
16k
0
votes
0
replies
1.9k
views
Seed file error: RE: BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
Annotation
GO
Cancer
BSgenome
OrganismDb
SNPlocs
TranscriptDb
Biostrings
BSgenome
GO
10.3 years ago
Hervé Pagès
16k
0
votes
0
replies
2.0k
views
BioStrings for current R: RE: BSgenomeForge seed file - seqnames field
GO
Cancer
BSgenome
OrganismDb
SNPlocs
TranscriptDb
Biostrings
BSgenome
rtracklayer
MEDIPS
10.3 years ago
Hervé Pagès
16k
0
votes
1
reply
943
views
custom variant AnnotationDbi?
Annotation
SNPlocs
Annotation
SNPlocs
updated 10.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 10.5 years ago by
Lescai, Francesco
▴ 380
0
votes
2
replies
3.5k
views
From location to get the SNP rs ID
SNP
Cancer
SNPlocs
ASSIGN
SNP
Cancer
SNPlocs
ASSIGN
updated 10.8 years ago by
Hervé Pagès
16k • written 10.8 years ago by
Fabrice Tourre
▴ 970
0
votes
4
replies
1.7k
views
IlluminaHumanMethylation450kprobe for nearest TSS calculation question
Annotation
BSgenome
SNPlocs
BSgenome
Annotation
BSgenome
SNPlocs
BSgenome
updated 11.1 years ago by
Tim Triche
★ 4.2k • written 11.1 years ago by
Guest User
★ 13k
0
votes
3
replies
1.9k
views
Problem locating SNP by rsID for SNPlocs.Hsapiens.dbSNP.20120608 package Bioconductor x
SNP
SNPlocs
SNP
SNPlocs
updated 11.2 years ago by
Hervé Pagès
16k • written 11.2 years ago by
Christina Chaivorapol
▴ 40
0
votes
0
replies
947
views
Problem locating SNP by rsID for SNPlocs.Hsapiens.dbSNP.20120608 package
SNP
SNPlocs
SNP
SNPlocs
11.2 years ago
Christina Chaivorapol
▴ 40
0
votes
4
replies
2.0k
views
predictCoding() return empty Granges
Annotation
Cancer
Arabidopsis thaliana
BSgenome
SNPlocs
TranscriptDb
BSgenome
Annotation
updated 11.5 years ago by
Hervé Pagès
16k • written 11.5 years ago by
sun
▴ 100
0
votes
3
replies
1.3k
views
predictCoding() return empty Granges
Annotation
Cancer
Arabidopsis thaliana
BSgenome
SNPlocs
TranscriptDb
BSgenome
Annotation
updated 11.5 years ago by
Hervé Pagès
16k • written 11.5 years ago by
sun
▴ 100
0
votes
4
replies
1.5k
views
GGtools: transScores function returning cis eQTL
SNP
Annotation
probe
SNPlocs
GGtools
SNP
Annotation
probe
SNPlocs
GGtools
updated 11.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 11.5 years ago by
Guest User
★ 13k
0
votes
0
replies
1.2k
views
dbSNP strand information
SNPlocs
safe
SNPlocs
safe
12.1 years ago
Alex Gutteridge
▴ 650
0
votes
3
replies
1.4k
views
Strand information for dbSNP packages
SNPlocs
safe
SNPlocs
safe
updated 12.1 years ago by
Valerie Obenchain
★ 6.8k • written 12.1 years ago by
Alex Gutteridge
▴ 650
0
votes
4
replies
1.4k
views
Finding coding SNPs with predictCoding
SNP
VariantAnnotation
BSgenome
SNPlocs
BSgenome
VariantAnnotation
SNP
VariantAnnotation
updated 12.1 years ago by
Valerie Obenchain
★ 6.8k • written 12.1 years ago by
Alex Gutteridge
▴ 650
0
votes
3
replies
1.7k
views
RE : maping SNPs
SNP
Annotation
Cancer
SNPlocs
TranscriptDb
GenomicFeatures
GenomicRanges
SNP
Annotation
updated 12.1 years ago by
Hervé Pagès
16k • written 12.1 years ago by
SimonNoël
▴ 450
0
votes
1
reply
1.1k
views
custom SNPlocs / BSgenome package
SNP
Annotation
Organism
Homo sapiens
BSgenome
SNPlocs
BSgenome
SNP
Annotation
Organism
updated 12.3 years ago by
Hervé Pagès
16k • written 12.3 years ago by
km
▴ 100
0
votes
1
reply
1.4k
views
Does liftOver work for SNPs mapping to different chr between different builds
SNP
GO
Cancer
SNPlocs
rtracklayer
SNP
GO
Cancer
SNPlocs
rtracklayer
updated 12.4 years ago by
Michael Lawrence
★ 11k • written 12.4 years ago by
shirley zhang
★ 1.0k
0
votes
6
replies
1.4k
views
SNPcounts error in SNPlocs.Hsapiens.dbSNP.20110815_0.99.3 (i.e., my attempt to update SNPlocs to dbSNP build 134)
Regression
SNPlocs
Biostrings
Regression
SNPlocs
Biostrings
updated 12.5 years ago by
Vincent J. Carey, Jr.
6.7k • written 12.5 years ago by
Tim Triche
★ 4.2k
0
votes
7
replies
1.7k
views
Probe ID to Sequence
SNPlocs
GenomicRanges
SNPlocs
GenomicRanges
updated 12.7 years ago by
Tim Triche
★ 4.2k • written 12.7 years ago by
khadeeja ismail
▴ 400
0
votes
2
replies
1.2k
views
seqnames on dbSNP object error
SNPlocs
SNPlocs
updated 13.0 years ago by
Hervé Pagès
16k • written 13.0 years ago by
Mark Cowley
▴ 910
0
votes
2
replies
1.5k
views
RE : RE : maping SNPs
SNP
SNPlocs
TranscriptDb
IRanges
GenomicFeatures
SNP
SNPlocs
TranscriptDb
IRanges
updated 13.2 years ago by
Valerie Obenchain
★ 6.8k • written 13.2 years ago by
SimonNoël
▴ 450
0
votes
0
replies
1.6k
views
RE : maping SNPs; first foundation challenge offered
SNP
Annotation
Cancer
SNPlocs
TranscriptDb
biomaRt
GenomicFeatures
SNP
Annotation
Cancer
13.3 years ago
Vincent J. Carey, Jr.
6.7k
0
votes
2
replies
1.3k
views
New SNPlocs data package for Human (dbSNP BUILD 131)
Cancer
BSgenome
SNPlocs
BSgenome
Cancer
BSgenome
SNPlocs
BSgenome
13.9 years ago
Hervé Pagès
16k
0
votes
3
replies
971
views
Fwd: cannot install SNPlocs.Hsapiens.dbSNP.20090506
SNPlocs
SNPlocs
updated 14.2 years ago by
Dan Strumpf
▴ 70 • written 14.2 years ago by
Sean Davis
21k
0
votes
1
reply
2.7k
views
How to find SNP names
SNP
Homo sapiens
SNPlocs
SNP
Homo sapiens
SNPlocs
updated 14.8 years ago by
Hervé Pagès
16k • written 14.8 years ago by
Kay Jaja
▴ 90
0
votes
3
replies
989
views
other human genomes, other SNP sets?
Sequencing
BSgenome
SNPlocs
BSgenome
Sequencing
BSgenome
SNPlocs
BSgenome
15.1 years ago
Paul Shannon
★ 1.1k
0
votes
0
replies
1.4k
views
About the bioconductor package SNPlocs.Hsapiens.dbSNP.20071016.
SNP
Cancer
SNPlocs
SNP
Cancer
SNPlocs
15.1 years ago
Hervé Pagès
16k
0
votes
4
replies
2.4k
views
how to modify a Biostrings object
SNPlocs
SNPlocs
updated 15.1 years ago by
Hervé Pagès
16k • written 15.1 years ago by
Paul Shannon
★ 1.1k
42 results • Page
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Just to clarify, when I originally posted the title and tags had listed "DESeq2" and then the post was changed after my answer was added. …
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Not quite sure what you mean by clone or fork the package on latest version of R. Bioconductor runs all builds on the latest version of R.…
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transcript name mapping between human and mouse
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