Showing : snpstats • reset
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GWAS with Affymetrix SNP 6.0
SNP oligo snpMatrix snpStats SNP oligo snpMatrix snpStats
updated 11.9 years ago by 6.7k • written 11.9 years ago by ▴ 20
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2.0k
views
Plink Data for Fst Calculations
snpStats snpStats
10.4 years ago Voke AO ▴ 760
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1.8k
views
snpStats/GWASTools conversion
cdf convert snpMatrix snpStats GWASTools cdf convert snpMatrix snpStats GWASTools
10.6 years ago Stephanie M. Gogarten ▴ 870
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2
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1.8k
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Automatic NA values generated by the ld() function of snpStats package
snpStats BioConductor LD Linkage Disequilibrium NA
9.2 years ago remi.tournebize ▴ 10
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1.7k
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(snpStats) Error: Error in terms.formula(formula, special, data = data) : invalid term in model formula
software error snpStats
9.5 years ago vickygarfield87 • 0
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3
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1.6k
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Error reading imputed file using snpStats package
SNP snpStats SNP snpStats
updated 10.3 years ago by 6.7k • written 10.3 years ago by ▴ 50
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1
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1.6k
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snpStats reference allele used in genetic associations?
SNP Category snpStats SNP Category snpStats
updated 9.9 years ago by 6.7k • written 9.9 years ago by ★ 13k
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1
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1.6k
views
[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
10.4 years ago David Winsemius ▴ 40
1
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1
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1.6k
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Write the "map" DataFrame from genotypeToSnpMatrix() to a text file
variantannotation DataFrame snpstats
8.4 years ago TimothéeFlutre ▴ 80
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4
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1.5k
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snpStats, read.long, alleles in two columns
SNP Genetics snpStats SNP Genetics snpStats
updated 12.1 years ago by ▴ 20 • written 12.1 years ago by ▴ 30
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2
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1.4k
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Weird error when installing VariantAnnotation and/or snpStats (whether from SVN or using biocLite)
snpStats snpStats
updated 12.5 years ago by 25k • written 12.5 years ago by ★ 4.2k
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1
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1.4k
views
col.summary error in snpStats
SNP Sequencing Annotation snpMatrix snpStats SNP Sequencing Annotation snpMatrix snpStats
updated 11.1 years ago by 6.7k • written 11.1 years ago by ▴ 10
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2
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1.3k
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Error in ld(): STRING_ELT() can only be applied to a 'character vector', not a 'NULL'
ld() snpStats
2.4 years ago Anastasiia • 0
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1
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1.3k
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snp analysis GWAS
snpstats
updated 9.4 years ago by ★ 13k • written 9.4 years ago by • 0
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1
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1.3k
views
snpStats --- MAF in Pedigrees
snpStats snpStats
updated 11.3 years ago by 6.7k • written 11.3 years ago by ▴ 60
1
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1
reply
1.2k
views
reading ped error when using the snpStats library
snpstats ped file R
6.5 years ago kzelaya2 ▴ 10
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3
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1.1k
views
SNPstats package bug report
snpStats snpStats
10.4 years ago Guest User ★ 13k
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1.1k
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snpStats Fst Implementation
snpStats snpStats
10.6 years ago Voke AO ▴ 760
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1.0k
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Error when computing ld with snpStats in big samples
software error snpstats `ld
7.9 years ago carlos.ruiz • 0
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1.0k
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snp.rhs.estimates and/or .tests and extracting results
snpStats additive model
7.1 years ago natalie.jean.mcdonald • 0
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0
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1.0k
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statistics from snpStats objects
SNP snpStats SNP snpStats
11.9 years ago james power ▴ 10
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997
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Are the 'trait' and 'phenotype' objects in the snpStats snp.rhs.estimates command the same thing?
snpStats
9.5 years ago vickygarfield87 • 0
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1
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923
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GWAS: access Imputation probabilities: snpStats
gwas snpstats GWAS Imputation snpStats
5.8 years ago GENOMIC_region • 0
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0
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726
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Extract flanking sequences SNP without reference genome
SNPData snpStats SNP flankingsequences
3.1 years ago Amber • 0
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0
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601
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Coercion of a numeric matrix into a SnpMatrix
snpStats
4.2 years ago schandry • 0
25 results • Page 1 of 1
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Answer: Citation for edgeR user guide by Gordon Smyth 50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp by clacarion • 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp by clacarion • 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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