Showing : software • reset
2
votes
3
replies
2.8k
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package for sex determination using sam/bam files
software sex package
8.5 years ago Pau Marc Muñoz Torres ▴ 20
2
votes
0
replies
2.3k
views
Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics genomics transcriptomics software Job
4.6 years ago Laurent Gatto 1.6k
0
votes
8
replies
2.1k
views
How to use the QUIDE-seq R/python package to remove non-genomic DNA sequences?
annotation software software error
updated 7.8 years ago by ★ 4.3k • written 7.9 years ago by ▴ 10
0
votes
0
replies
1.9k
views
Job: Harvard Medical School: Jr. Software Engineer/Biomedical Informatician
software engineer bioinformatician job Job
9.5 years ago Doe, Aimee ▴ 40
0
votes
2
replies
1.6k
views
News: Final List of Deprecated Packages for Bioc3.10
annotation experimentdata deprecation release software News
4.5 years ago • updated 4.4 years ago shepherl 3.8k
1
vote
3
replies
1.6k
views
Are there any bioconductor github mirrors for data packages?
software bioc-devel developers R
updated 8.4 years ago by ★ 8.2k • written 8.4 years ago by • 0
2
votes
2
replies
1.5k
views
News: Final List of Deprecated Packages for Bioc3.13
Workflow Software ExperimentData Deprecation
3.4 years ago • updated 2.9 years ago shepherl 3.8k
0
votes
0
replies
1.5k
views
News: The NIH Software Discovery Index | We invite your comments
software NIH index News
9.5 years ago Sean Davis 21k
1
vote
8
replies
1.5k
views
News: Final List of Deprecated Package Bioc 3.9
deprecation release software experimentData News
written 5.1 years ago by 3.8k
3
votes
0
replies
1.4k
views
News: List of Deprecated Packages for Bioc3.12
annotation software experiment data deprecated News
3.6 years ago shepherl 3.8k
1
vote
2
replies
1.4k
views
News: Final List of Deprecated Packages for Bioc3.12
annotation software experimentdata deprecated News
3.5 years ago shepherl 3.8k
0
votes
5
replies
1.3k
views
News: Final List of Deprecated Packages for Bioc3.14
ExperimentData Deprecation Software Release Workflow
2.5 years ago • updated 24 months ago shepherl 3.8k
0
votes
1
reply
1.2k
views
News: List of Deprecated Package Bioc 3.9
deprecate release devel software experimentdata News
5.2 years ago shepherl 3.8k
2
votes
4
replies
1.2k
views
Bioconductor package development
package R software development
updated 3.5 years ago by 25k • written 3.5 years ago by • 0
0
votes
1
reply
1.1k
views
Meta_analysis of different platforms of microarray data
microarray meta analysis cancer Software R
updated 5.3 years ago by 65k • written 5.3 years ago by • 0
3
votes
6
replies
1.1k
views
News: Bioconductor will rename the default branch on `git.bioconductor.org` to `devel`
Software Bioconductor Devel devel
updated 13 months ago by • 0 • written 13 months ago by 3.8k
0
votes
0
replies
1.1k
views
Job: R programmer position in genetic epidemiology/bioconductor
genetics genomics software Job
3.5 years ago Vincent J. Carey, Jr. 6.7k
0
votes
1
reply
1.1k
views
News: List of Deprecated Package Bioc 3.9
deprecate release software devel News
5.3 years ago shepherl 3.8k
0
votes
0
replies
1.1k
views
News: DEADLINE: All packages to pass R CMD build and R CMD check
release software experimentdata workflows News
6.0 years ago shepherl 3.8k
1
vote
1
reply
1.1k
views
How to use ENCprime via coRdon with a custom background sequence set?
software codon usage bias dna
updated 4.4 years ago by ▴ 10 • written 4.4 years ago by ▴ 40
0
votes
3
replies
1.0k
views
News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
4.9 years ago shepherl 3.8k
0
votes
1
reply
1.0k
views
News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software deprecation release News
4.7 years ago • updated 4.6 years ago shepherl 3.8k
5
votes
0
replies
1.0k
views
News: Bioconductor 3.13 is Released!
Release Bioconductor Packages Software
2.9 years ago shepherl 3.8k
2
votes
2
replies
1.0k
views
News: Bioconductor Devel 3.11 Notification
software bioconductor packages reports News
4.4 years ago shepherl 3.8k
0
votes
3
replies
994
views
News: Final List of Deprecated Packages for Bioc3.11
software annotation experiment data deprecated News
updated 4.0 years ago by ▴ 160 • written 4.1 years ago by 3.8k
2
votes
1
reply
963
views
Software Compatibility Issue Between phyloseq and lme4 Packages
phyloseq microbiome Software
updated 7 months ago by ★ 4.0k • written 7 months ago by ▴ 10
4
votes
0
replies
921
views
News: Bioconductor 3.12 is Released!
Software release Bioconductor Packages Release
3.5 years ago shepherl 3.8k
8
votes
0
replies
873
views
News: Bioconductor 3.14 is Released!
release Packages Software Release Bioconductor
2.5 years ago shepherl 3.8k
0
votes
0
replies
865
views
News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
4.4 years ago shepherl 3.8k
0
votes
1
reply
847
views
News: Initial List of Deprecated Packages Bioc 3.10
software experimentdata release deprecation annotation News
4.9 years ago shepherl 3.8k
0
votes
0
replies
841
views
Job: Hiring Bioinformaticians, Data Engineers, & Computer Scientists @ Flagship Labs 77
data immunology software vaccinology
2.6 years ago Daniel • 0
6
votes
0
replies
840
views
News: Bioconductor 3.10 is released!!
release software packages bioconductor News
4.5 years ago shepherl 3.8k
0
votes
1
reply
838
views
News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
4.3 years ago shepherl 3.8k
0
votes
0
replies
835
views
News: List of Deprecated Packages Bioc 3.10
annotation experimentdata software release deprecation News
4.6 years ago • updated 4.5 years ago shepherl 3.8k
8
votes
0
replies
830
views
News: Bioconductor 3.15 is Released!
Software Release Packages Bioconductor
24 months ago • updated 23 months ago shepherl 3.8k
0
votes
0
replies
802
views
News: List of Deprecated Packages for Bioc3.12
deprecated experiment data software annotation News
3.9 years ago shepherl 3.8k
0
votes
2
replies
799
views
Problem in dowloading "TxDb.Hsapiens.UCSC.hg38.knownGene"
annotation software TxDb
updated 3.9 years ago by 65k • written 3.9 years ago by • 0
4
votes
0
replies
795
views
News: Bioconductor 3.11 is Released!
software bioconductor release packages News
4.0 years ago shepherl 3.8k
1
vote
0
replies
776
views
News: Bioconductor 3.16 is Released!
Release Packages Bioconductor Software
17 months ago shepherl 3.8k
0
votes
2
replies
772
views
What is Software, Annotationdata, Experimentdata and workflow category?
Software annotation experiment workflow
updated 3.7 years ago by 3.8k • written 3.7 years ago by • 0
0
votes
0
replies
755
views
News: List of Deprecated Packages Bioc 3.11
annotation experimentdata software release deprecation News
4.1 years ago shepherl 3.8k
0
votes
0
replies
745
views
Job: Research software engineer at UPF Barcelona
JobPosting Devel GSVA Software
17 months ago Robert Castelo ★ 3.2k
0
votes
0
replies
735
views
Job: Software Developer - BC Cancer Research Center, Vancouver BC
software bioinformatics sequecing Job
4.8 years ago jmaanaki • 0
0
votes
0
replies
695
views
News: New Package Submission Deadline Tomorrow for Bioconductor 3.16
Release Devel Bioconductor Software
18 months ago shepherl 3.8k
0
votes
0
replies
601
views
News: New Package Submission Deadline Tomorrow for Bioconductor 3.15
Release Software Bioconductor Devel
2.0 years ago shepherl 3.8k
0
votes
0
replies
576
views
News: Bioconductor 3.17 is Released!
Packages Release Bioconductor Software
11 months ago shepherl 3.8k
0
votes
0
replies
541
views
News: Bioconductor 3.17 Release Schedule
Softwar Release Bioconductor release Software
13 months ago shepherl 3.8k
0
votes
6
replies
539
views
News: List of Deprecated Packages for Bioc3.19
Release Devel ExperimentData Software
6 weeks ago • updated 5 days ago shepherl 3.8k
5
votes
1
reply
412
views
News: Bioconductor 3.18 is Released!
Packages Bioconductor Release Software
written 5 months ago by 3.8k
0
votes
1
reply
399
views
Generate false reads for testing
mgu74bv2cdf Software Alignment
updated 10 months ago by 65k • written 10 months ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Input Question for deseq.r by ATpoint ★ 4.0k
It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…
Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k
In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …
Answer: A ComBat-seq issue: the covariates are confounded by ATpoint ★ 4.0k
```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…
Comment: DESeq2 setting significant p-value by Dev • 0
after running DESeq2 does it sort the value on the basis of pvalue, or anything, or does it give the data back in the input format I have …
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
But wouldn't this result in a different gene set for each analysis stratification? How can you then compare if maybe gene x comes up in Tim…
Votes
Comment: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: Reading huge bismark coverage files using bbseq::read.bismark
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
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