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Sort decreasing only numeric columns (more than one) in a dataframe with character and numeric column
sort
R
RNAseq
character
numeric
updated 3.7 years ago by
Ram
▴ 190 • written 3.7 years ago by
camillab.
▴ 10
3
votes
4
replies
3.9k
views
Sort clusterProfiler result
clusterProfiler
sort
updated 6.8 years ago by
sghoshucla
• 0 • written 8.6 years ago by
horcsct
▴ 10
3
votes
3
replies
1.4k
views
Sorting data frame derived from GRanges
granges
data.frame
sort
updated 8.5 years ago by
Michael Lawrence
★ 11k • written 8.5 years ago by
igor
▴ 40
17
votes
4
replies
16k
views
How to properly sort GRanges?
granges
genomicranges
sort
seqnames
order
updated 9.0 years ago by
yinghua
▴ 30 • written 9.5 years ago by
enricoferrero
▴ 660
4
votes
2
replies
2.5k
views
Easy way to sort GRangesList by seqname/start position?
grangeslist
sort
updated 9.3 years ago by
Hervé Pagès
16k • written 9.3 years ago by
Johannes Rainer
★ 2.0k
5 results • Page
1 of 1
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Comment: How to retrieve gene ontology GO class from gene list?
by
bandconductor
• 0
Thanks, this is potentially a much faster way than parsing BiomRt. However, it is only returning one GO term right now (biomaRt returns a f…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
Both `RUVseq` and `sva` are meant to be used to remove technical variability. The problem is the identification of variability that is tech…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions
by
JKim
• 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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