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spade
•
reset
2
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13
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Issues connecting with R 3.2.2 to source("http://bioconductor.org/biocLite.R")
spade
8.5 years ago
frostbite907
• 0
0
votes
4
replies
1.5k
views
Why SPADE package has been removed from bioconductor?
spade
release
remove
clustering
updated 5.9 years ago by
James W. MacDonald
65k • written 5.9 years ago by
a.n.horvath
• 0
0
votes
2
replies
2.0k
views
Unable to follow example SPADE usage - Cannot create iterator, invalid vertex id
igraph
spade
updated 6.9 years ago by
johnheath346
• 0 • written 8.4 years ago by
duncanjamesmurray01
• 0
0
votes
1
reply
1.1k
views
Algorithm fail to generate CSV file
R
flowjo
spade
updated 7.5 years ago by
James W. MacDonald
65k • written 7.5 years ago by
maria_him4ever
• 0
0
votes
1
reply
1.0k
views
Version 1.10 of spade appears to be non-compatible with Cytoscape 2.8.x
spade
spade
updated 10.1 years ago by
Michael Linderman
▴ 10 • written 10.1 years ago by
Guest User
★ 13k
0
votes
0
replies
824
views
How to find frequent sequences.
spade
spade
11.8 years ago
Guest User
★ 13k
0
votes
0
replies
771
views
Interpreting Spade analysis results
spade
6.9 years ago
Pankaj Agarwal
▴ 100
7 results • Page
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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference
by
andrebolerbarros
▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
ATpoint
★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference
by
ATpoint
★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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ATpoint
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i.sudbery
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shepherl
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