Bioconductor SpatialLIBD

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spatialLIBD

updated 20 months ago by Leonardo Collado Torres ★ 1.0k • written 20 months ago by kstern • 0

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spatialLIBD

updated 20 months ago by Leonardo Collado Torres ★ 1.0k • written 20 months ago by kstern • 0

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spatialLIBD

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biorxiv spatialLIBD News

written 4.1 years ago by Leonardo Collado Torres ★ 1.0k

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Comment: Multi factor design edgeR/Deseq2 by Elizabeth • 0

Sorry I realise this thread is ancient, but I'm wondering why it's ok to remove the last column from the design matrix? Also, why this desi…

Comment: DESeq2 setting significant p-value by Michael Love 41k

It does not resort. Also the dataset and results will have the same row names from object creation throughout the analysis.

Comment: Input Question for deseq.r by ATpoint ★ 4.0k

It is unclear what "deseq.r" is. It is not part of DESeq2, and almost certainly no part of RSeqAn. Please add details, and keep in mind tha…

Answer: DESEQ2 output gives multiple groups when only 2 groups are present by ATpoint ★ 4.0k

In the first PCA plot there is almost certainly some hidden character like whitespaces in the column from colData that encodes this group. …

Answer: A ComBat-seq issue: the covariates are confounded by ATpoint ★ 4.0k

```r > table(batch, group) group batch egfr gfp her2 1 0 12 5 2 6 6 0 ``` All of her2 is batch2, all of egfr i…

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