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News: [Pre-print] Transcriptome-scale spatial gene expression in the human dorsolateral prefrontal cortex
biorxiv spatialLIBD News
written 4.1 years ago by ★ 1.0k
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unable to install.packages("spatialLIBD")
spatialLIBD
updated 20 months ago by ★ 1.0k • written 20 months ago by • 0
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spot- vs cell-level data access
spatialLIBD
updated 20 months ago by ★ 1.0k • written 20 months ago by • 0
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Annotations do not load in shiny app
spatialLIBD
updated 2.7 years ago by ★ 1.0k • written 2.8 years ago by • 0
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Link to download the annotations
spatialLIBD
updated 2.1 years ago by ★ 1.0k • written 2.3 years ago by • 0
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Comment: Differential peaks that were not identified in diffbind were identified in diseq by lonn • 0
Thank you for your suggestions! Here is the MA plot: ![enter image description here][1] I tried several normalization methods with DiffBi…
Answer: OrgDb for maize by Guido Hooiveld ★ 3.9k
I notice the data you are working with is based on `ensembl` ids. This is important, because the `OrgDb` are annotation databases that are …
Comment: Theoretical WGCNA Question by Garrett • 0
Thanks Peter!
Comment: FGSEA pre-ranked input in increasing order or decreasing by sropri • 0
Thank you!
Comment: FGSEA pre-ranked input in increasing order or decreasing by alserg ▴ 240
They are reorder in the decreasing order.
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Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
Comment: DEXSeq DEXSeqDataSet count matrix duplication
Comment: Error in champ.load(): The following specified files do not exist
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