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Specond with R 3.2.2
SpeCond
updated 6.6 years ago by ▴ 50 • written 6.7 years ago by ▴ 20
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Questions regarding 'specond' r-program library package
Kidney Lung Prostate probe SpeCond Kidney Lung Prostate probe SpeCond
8.5 years ago Florence Cavalli ▴ 50
2 results • Page 1 of 1
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Comment: Transcript-level differential expression using DESeq2 by Michael Love 36k
Did you see the part of the vignette where we talk about this? https://bioconductor.org/packages/release/bioc/vignettes/fishpond/inst/doc/…
Comment: Transcript-level differential expression using DESeq2 by Ekta • 0
Hi Michael, thanks for your reply. One more question. If the qvalue (and pvalue) for all DTEs are the same, the Volcano plot will look lik…
Comment: R: problem with running time-series analysis software: Mfuzz by soda ▴ 80
I have solved this problem by myself. My data.frame is not suitable for Mfuzz.
Comment: R: problem with running time-series analysis software: Mfuzz by Kevin Blighe 3.5k
Cross-posted: https://www.biostars.org/p/9524023/
Comment: ROC plot for OPLS-DA by Eddie • 0
Hi, That was helpful. Thank you. How to do the same for the testing data?
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Comment: Using vegan::betadisper for determing if I subset my design for DESeq2
Answer: How to best visualize multi-level transcriptomics experiment data?
A: Interpreting results of sample-to-sample PCA/clustering and changing assignment
C: DESeq2 - Differences between plotCounts and normalized counts
C: DESEq2 - Change reference level change "Contrasts" results
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