Showing : spectral counts • reset
8
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Statistical analysis of Spectral count data : edgeR, limma or others ?
spectral counts proteomics limma edger deseq
updated 6.9 years ago by 45k • written 6.9 years ago by ▴ 60
25
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5.0k
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voom for spectral counts
limma voom proteomics spectral counts massspectrometry
updated 7.3 years ago by 45k • written 7.3 years ago by ▴ 40
2 results • Page 1 of 1
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Comment: error with: .make_splicings <- function(exons, cds, stop_codons=NULL) by James W. MacDonald 59k
It's not clear from this what the problem is. Rather than running under `snakemake` you might run the R code directly. I mean it's obvious …
Comment: CPM after RUVseq by James W. MacDonald 59k
I am unfamiliar with a `counts` function (your `counts(set)`), so it's not clear what exactly you are putting into that `DGEList`. But if i…
Comment: error with: .make_splicings <- function(exons, cds, stop_codons=NULL) by rsnorman • 0
Thanks for the advice! I need to use this particular bacterial strain, but I did locate a more recent annotation for it and that cleared th…
Comment: Error in h(simpleError(msg, call)) : when calling makeOrgPackagefromNCBI() by shepherl 3.1k
I'm not able to reproduce this. Maybe it was a temporary issue with biomaRt? ``` > makeOrgPackageFromNCBI( + version = "0.1", + …
Comment: CPM after RUVseq by Jess • 0
Ah I think I know where the communication breakdown is occurring. When I think of RUVr, I'm including fitting the preliminary model in edge…
Votes
A: Using the plotting functions of clusterProfiler / enrichplot with enrichment res
Answer: CPM after RUVseq
Comment: Merging two plated in R
Answer: Merging two plated in R
Answer: Merging two plated in R
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