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splatter
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3
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3
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2.3k
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is SCEset fully abandoned in scran?
scran
scater
splatter
normalization
updated 6.5 years ago by
davis
▴ 90 • written 6.5 years ago by
wt215
• 0
0
votes
3
replies
2.0k
views
Trouble installing splatter
installation
splatter
7.0 years ago
luke.zappia
▴ 50
5
votes
2
replies
1.6k
views
Accessing normalized counts
splatter
singlecellexperiment
scater
6.0 years ago
luke.zappia
▴ 50
2
votes
3
replies
1.3k
views
splatter simulating paths
splatter
single cell
6.0 years ago
nikolaspapadop
▴ 10
0
votes
5
replies
1.2k
views
How to use Splatter to simulate a known number of DE genes in only two groups of cells ?
splatter
Splatter
updated 5.2 years ago by
luke.zappia
▴ 50 • written 5.2 years ago by
chenxofhit
• 0
0
votes
1
reply
1.1k
views
Control group size
splatter
6.5 years ago
luke.zappia
▴ 50
0
votes
1
reply
1.1k
views
Splatter: How to simulate cells in different groups and different path at the same time?
splatter
6.4 years ago
luke.zappia
▴ 50
1
vote
1
reply
962
views
Any pointers on simulating cell outliers?
splatter
simulation
5.9 years ago
luke.zappia
▴ 50
0
votes
1
reply
957
views
Splatter (unknown correlation between gene expression level in different cell types)
SingleCellData
splatter
updated 24 months ago by
luke.zappia
▴ 50 • written 24 months ago by
Fatima
• 0
4
votes
2
replies
936
views
Splatter: simulating fold changes for specific genes?
splatter
5.5 years ago
Brian Haas
▴ 90
0
votes
1
reply
910
views
Robustness of Splat cell grouping
splatter
6.9 years ago
luke.zappia
▴ 50
0
votes
2
replies
881
views
I cannot install the splatter on colab
splatter
biocmanager
written 3.1 years ago by
Tianyu
• 0
0
votes
1
reply
874
views
Simulating paths returns identical values
splatter
6.0 years ago
luke.zappia
▴ 50
1
vote
2
replies
830
views
Splatter: which parameters can cause individual variability( expression levels of genes should change across samples)
SingleCellExperiment
splatter
2.5 years ago • updated 2.4 years ago
Fatima
• 0
0
votes
1
reply
718
views
DE analysis packages not detecting Splat DE simulated genes
splatter
updated 3.7 years ago by
luke.zappia
▴ 50 • written 3.7 years ago by
olympia.hardy13
• 0
0
votes
1
reply
647
views
change values on Differential Expression parameters
splatter
updated 4.5 years ago by
luke.zappia
▴ 50 • written 4.5 years ago by
jp3770
• 0
16 results • Page
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Comment: Reproducibility issue with scran together with lapply and BiocParallel
by
ATpoint
★ 4.0k
Thanks Aaron for the response. RNGseed (for me) has no effect. I actually stumbled over this in one of my analysis where I have a constant …
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
winwater0928
• 0
Thank you for your comment! 1)"Your contrast is comparing LGR5 to Homeostasis." means (Lgr5)/(Homeostasis). Is it right? Then, I think if…
Answer: Reproducibility issue with scran together with lapply and BiocParallel
by
Aaron Lun
★ 28k
IIRC **BiocParallel** switches to a different RNG when inside its own functions like `bplapply` - specifically L'Ecuyer-CMRG, as opposed to…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
This looks terrible for RNASeq data, because it's not RNASeq data. It's a matrix of pretty random numbers, which you know because you poste…
Comment: DESeq2 output used for PCA plot on R studio
by
Aaliya
• 0
I had taken this code from internet, but after reading about it and I did on my own, I would be making a post to ask for the suggestions if…
Votes
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
Answer: Interpret plot from DiffBind
Answer: How to retrieve gene ontology GO class from gene list?
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