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splatter
•
reset
3
votes
3
replies
2.3k
views
is SCEset fully abandoned in scran?
scran
scater
splatter
normalization
updated 6.5 years ago by
davis
▴ 90 • written 6.5 years ago by
wt215
• 0
0
votes
3
replies
2.0k
views
Trouble installing splatter
installation
splatter
6.9 years ago
luke.zappia
▴ 50
5
votes
2
replies
1.6k
views
Accessing normalized counts
splatter
singlecellexperiment
scater
6.0 years ago
luke.zappia
▴ 50
2
votes
3
replies
1.3k
views
splatter simulating paths
splatter
single cell
6.0 years ago
nikolaspapadop
▴ 10
0
votes
5
replies
1.2k
views
How to use Splatter to simulate a known number of DE genes in only two groups of cells ?
splatter
Splatter
updated 5.2 years ago by
luke.zappia
▴ 50 • written 5.2 years ago by
chenxofhit
• 0
0
votes
1
reply
1.1k
views
Control group size
splatter
6.4 years ago
luke.zappia
▴ 50
0
votes
1
reply
1.1k
views
Splatter: How to simulate cells in different groups and different path at the same time?
splatter
6.4 years ago
luke.zappia
▴ 50
1
vote
1
reply
957
views
Any pointers on simulating cell outliers?
splatter
simulation
5.9 years ago
luke.zappia
▴ 50
0
votes
1
reply
952
views
Splatter (unknown correlation between gene expression level in different cell types)
SingleCellData
splatter
updated 23 months ago by
luke.zappia
▴ 50 • written 24 months ago by
Fatima
• 0
4
votes
2
replies
935
views
Splatter: simulating fold changes for specific genes?
splatter
5.5 years ago
Brian Haas
▴ 90
0
votes
1
reply
908
views
Robustness of Splat cell grouping
splatter
6.9 years ago
luke.zappia
▴ 50
0
votes
1
reply
872
views
Simulating paths returns identical values
splatter
6.0 years ago
luke.zappia
▴ 50
0
votes
2
replies
872
views
I cannot install the splatter on colab
splatter
biocmanager
written 3.1 years ago by
Tianyu
• 0
1
vote
2
replies
822
views
Splatter: which parameters can cause individual variability( expression levels of genes should change across samples)
SingleCellExperiment
splatter
2.4 years ago
Fatima
• 0
0
votes
1
reply
714
views
DE analysis packages not detecting Splat DE simulated genes
splatter
updated 3.7 years ago by
luke.zappia
▴ 50 • written 3.7 years ago by
olympia.hardy13
• 0
0
votes
1
reply
643
views
change values on Differential Expression parameters
splatter
updated 4.5 years ago by
luke.zappia
▴ 50 • written 4.5 years ago by
jp3770
• 0
16 results • Page
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Comment: Error in champ.load(): The following specified files do not exist
by
Basti
▴ 760
The error stems from the Basename column, please see solution here : https://support.bioconductor.org/p/p132482/
Comment: FilterByExpr low counts with small sample size
by
Gordon Smyth
50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures
by
Gordon Smyth
50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma
by
Gordon Smyth
50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups.
by
Chris
• 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with psychology doctor who treat Alzheimer patients and they don'…
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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