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QuasR rnaseq alignment splicemap bowtie2

6.3 years ago Gabriella • 0

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SpliceMap QuasR RNAseq Alignment

updated 6.4 years ago by Hotz, Hans-Rudolf ▴ 400 • written 6.4 years ago by tarek.mohamed ▴ 10

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Comment: rename phenotypic variables in pData (microarray) or colData (RNA-Seq) by Basti ▴ 330

`names(pData(microarray))[1]<- "NEW_VAR"` works, what is the error you have ?

Comment: Error while running DESeq2 by Basti ▴ 330

Your error might stem from stringie then, unfortunately I do not use it and I think you would have a better answer by opening a github issu…

Comment: Error while running DESeq2 by srikar • 0

I have generated the gene count matrix manually . Upon downloading the data from sra, perfomed fastqc analysis and then proceeded with trim…

Comment: Error while running DESeq2 by Basti ▴ 330

I suggest you to check your counts matrix because there shouldn't be negative raw counts in this matrix. You should investigate why : is it…

Comment: How to get DESeq2 results for a list of genes by Lucía ▴ 10

Wow, it costs zero dollars (or whatever currency you use) to be kind. It is not necessary nor productive to be unkind or shame users who ar…

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