Bioconductor Splicing

Showing : splicing • reset

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205

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splicing limma edgeR

updated 28 days ago by Gordon Smyth 50k • written 28 days ago by scoops_streams_06 • 0

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483

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transcriptome splicing assembly

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by Marianna ▴ 20

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819

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splicing Exon featureCounts subread DEXSeq

23 months ago • updated 22 months ago NIK • 0

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675

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

3.5 years ago noahhelton98 ▴ 20

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2.2k

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edger normalization differential exon usage splicing

updated 3.5 years ago by Yunshun Chen ▴ 840 • written 3.5 years ago by oakhamwolf • 0

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1.1k

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DEXSeq Splicing Exon Usage

4.2 years ago gunjan.dikshit • 0

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1.1k

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ciri splicing splicesites

updated 4.2 years ago by lhddiallo • 0 • written 5.9 years ago by csijst • 0

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813

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junctionseq splicing RNAseq DEXSeq

4.4 years ago stuart ▴ 10

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1.5k

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genomicalignments splicing coverage

updated 4.5 years ago by Michael Lawrence ★ 11k • written 7.0 years ago by rasi1983 ▴ 10

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877

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dexseq splicing sqtl qtl

updated 5.2 years ago by Alejandro Reyes ★ 1.9k • written 5.2 years ago by rtunney2 • 0

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1.7k

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deseq2 splicing

updated 6.0 years ago by Michael Love 41k • written 6.0 years ago by yannickwurm • 0

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1.5k

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DRIMSeq splicing differential isoform usage

updated 7.2 years ago by Gosia Nowicka ▴ 90 • written 7.2 years ago by kristoffer.vittingseerup ▴ 20

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2.6k

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sgseq splicing alternative splicing

updated 8.1 years ago by Leonard Goldstein ▴ 170 • written 8.1 years ago by vakul.mohanty ▴ 10

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1.7k

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microarray splicing

updated 8.2 years ago by Sonika Tyagi ▴ 20 • written 9.5 years ago by gv ▴ 40

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1.5k

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DEXSeq splicing python SAM

8.5 years ago Fiona ▴ 70

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2.1k

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SGSeq analyzeFeatures Splicing

9.3 years ago Paolo Guarnieri ▴ 20

16 results • Page 1 of 1

Recent ...

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Comment: DESeq filtering specific to contrasts by Michael Love 41k

It will likely not filter it out, but really the per-dataset details would affect the results.

Comment: DESeq filtering specific to contrasts by Carlin95 • 0

Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…

Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10

Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…

Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0

Thank you very much for your reply! I will do so. Kind regards, Seyram

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…

Votes

Install/Switch between multiple versions of R, Rstudio, and Bioconductor

A: Docker container with bioconductor and devtools

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

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