Bioconductor Splicing

Showing : splicing • reset

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199

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splicing limma edgeR

updated 26 days ago by Gordon Smyth 50k • written 27 days ago by scoops_streams_06 • 0

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482

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transcriptome splicing assembly

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by Marianna ▴ 20

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815

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splicing Exon featureCounts subread DEXSeq

23 months ago • updated 22 months ago NIK • 0

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674

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

3.5 years ago noahhelton98 ▴ 20

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2.2k

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edger normalization differential exon usage splicing

updated 3.5 years ago by Yunshun Chen ▴ 840 • written 3.5 years ago by oakhamwolf • 0

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1.1k

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DEXSeq Splicing Exon Usage

4.2 years ago gunjan.dikshit • 0

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1.1k

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ciri splicing splicesites

updated 4.2 years ago by lhddiallo • 0 • written 5.9 years ago by csijst • 0

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811

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junctionseq splicing RNAseq DEXSeq

4.4 years ago stuart ▴ 10

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1.5k

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genomicalignments splicing coverage

updated 4.5 years ago by Michael Lawrence ★ 11k • written 7.0 years ago by rasi1983 ▴ 10

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877

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dexseq splicing sqtl qtl

updated 5.2 years ago by Alejandro Reyes ★ 1.9k • written 5.2 years ago by rtunney2 • 0

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1.7k

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deseq2 splicing

updated 6.0 years ago by Michael Love 41k • written 6.0 years ago by yannickwurm • 0

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1.5k

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DRIMSeq splicing differential isoform usage

updated 7.2 years ago by Gosia Nowicka ▴ 90 • written 7.2 years ago by kristoffer.vittingseerup ▴ 20

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2.6k

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sgseq splicing alternative splicing

updated 8.1 years ago by Leonard Goldstein ▴ 170 • written 8.1 years ago by vakul.mohanty ▴ 10

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1.7k

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microarray splicing

updated 8.2 years ago by Sonika Tyagi ▴ 20 • written 9.5 years ago by gv ▴ 40

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1.5k

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DEXSeq splicing python SAM

8.5 years ago Fiona ▴ 70

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2.1k

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SGSeq analyzeFeatures Splicing

9.3 years ago Paolo Guarnieri ▴ 20

16 results • Page 1 of 1

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Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k

As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…

Comment: Batch correction and repeated measures by Gordon Smyth 50k

In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…

Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k

I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…

Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0

Hi Gordon, thank you so much for further guidance! I discussed this issue with doctor know about Alzheimer and they don't expect significan…

Comment: Single-Cell Data Simulation from Bulk RNA-seq by wichaidi • 0

Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.

Votes

Answer: How many of my genes from my gene list are in each KEGG pathway?

Comment: Light difference when using coef vs omit a group when compare 3 groups.

DESeq2 variance transformation error and plot dispersion Estimate

A: DESeq2 variance transformation error and plot dispersion Estimate

ensembl to hgnc symbols creates duplicates

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