Bioconductor Splicing

Showing : splicing • reset

votes

214

views

splicing limma edgeR

updated 4 weeks ago by Gordon Smyth 50k • written 4 weeks ago by scoops_streams_06 • 0

votes

490

views

transcriptome splicing assembly

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by Marianna ▴ 20

votes

823

views

splicing Exon featureCounts subread DEXSeq

23 months ago NIK • 0

votes

replies

677

views

psichomics SUPPA Splicing Alternative Splicing Retained Introns

3.5 years ago noahhelton98 ▴ 20

votes

replies

2.2k

views

edger normalization differential exon usage splicing

updated 3.5 years ago by Yunshun Chen ▴ 840 • written 3.5 years ago by oakhamwolf • 0

votes

replies

1.1k

views

DEXSeq Splicing Exon Usage

4.2 years ago gunjan.dikshit • 0

votes

817

views

junctionseq splicing RNAseq DEXSeq

4.4 years ago stuart ▴ 10

votes

879

views

dexseq splicing sqtl qtl

updated 5.2 years ago by Alejandro Reyes ★ 1.9k • written 5.2 years ago by rtunney2 • 0

votes

1.1k

views

ciri splicing splicesites

updated 4.2 years ago by lhddiallo • 0 • written 5.9 years ago by csijst • 0

votes

replies

1.7k

views

deseq2 splicing

updated 6.0 years ago by Michael Love 41k • written 6.0 years ago by yannickwurm • 0

vote

replies

1.5k

views

genomicalignments splicing coverage

updated 4.5 years ago by Michael Lawrence ★ 11k • written 7.1 years ago by rasi1983 ▴ 10

vote

replies

1.5k

views

DRIMSeq splicing differential isoform usage

updated 7.2 years ago by Gosia Nowicka ▴ 90 • written 7.2 years ago by kristoffer.vittingseerup ▴ 20

votes

replies

2.6k

views

sgseq splicing alternative splicing

updated 8.1 years ago by Leonard Goldstein ▴ 170 • written 8.1 years ago by vakul.mohanty ▴ 10

votes

replies

1.5k

views

DEXSeq splicing python SAM

8.5 years ago Fiona ▴ 70

vote

replies

2.1k

views

SGSeq analyzeFeatures Splicing

9.4 years ago • updated 9.3 years ago Paolo Guarnieri ▴ 20

vote

replies

1.7k

views

microarray splicing

updated 8.2 years ago by Sonika Tyagi ▴ 20 • written 9.5 years ago by gv ▴ 40

16 results • Page 1 of 1

Recent ...

Replies

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq by Michael Love 41k

Sounds reasonable. For ranking genes, you could choose those with low decay rate but removing thoses where it is indistinguishable from …

Answer: Citation for edgeR user guide by Gordon Smyth 50k

Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…

Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You are just making up data? What is the point of this exercise?

Comment: How to retrieve gene ontology GO class? by James W. MacDonald 65k

What do you mean by 'the information'? Do you have things in particular that you want?

Comment: minfi::read.metharray.exp by clacarion • 0

I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…

Votes

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Comment: Trying to use enrichGO

Awards • All