Bioconductor Splicing

Showing : splicing • reset

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2.6k

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sgseq splicing alternative splicing

updated 8.1 years ago by Leonard Goldstein ▴ 170 • written 8.1 years ago by vakul.mohanty ▴ 10

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2.2k

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edger normalization differential exon usage splicing

updated 3.5 years ago by Yunshun Chen ▴ 840 • written 3.5 years ago by oakhamwolf • 0

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1.7k

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deseq2 splicing

updated 6.0 years ago by Michael Love 41k • written 6.0 years ago by yannickwurm • 0

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1.5k

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DRIMSeq splicing differential isoform usage

updated 7.2 years ago by Gosia Nowicka ▴ 90 • written 7.2 years ago by kristoffer.vittingseerup ▴ 20

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1.7k

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microarray splicing

updated 8.2 years ago by Sonika Tyagi ▴ 20 • written 9.5 years ago by gv ▴ 40

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1.5k

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genomicalignments splicing coverage

updated 4.5 years ago by Michael Lawrence ★ 11k • written 7.0 years ago by rasi1983 ▴ 10

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2.1k

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SGSeq analyzeFeatures Splicing

9.3 years ago Paolo Guarnieri ▴ 20

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819

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splicing Exon featureCounts subread DEXSeq

23 months ago • updated 22 months ago NIK • 0

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204

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splicing limma edgeR

updated 28 days ago by Gordon Smyth 50k • written 28 days ago by scoops_streams_06 • 0

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483

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transcriptome splicing assembly

updated 17 months ago by James W. MacDonald 65k • written 17 months ago by Marianna ▴ 20

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1.5k

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DEXSeq splicing python SAM

8.5 years ago Fiona ▴ 70

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1.1k

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ciri splicing splicesites

updated 4.2 years ago by lhddiallo • 0 • written 5.9 years ago by csijst • 0

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877

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dexseq splicing sqtl qtl

updated 5.2 years ago by Alejandro Reyes ★ 1.9k • written 5.2 years ago by rtunney2 • 0

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813

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junctionseq splicing RNAseq DEXSeq

4.4 years ago stuart ▴ 10

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1.1k

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DEXSeq Splicing Exon Usage

4.2 years ago gunjan.dikshit • 0

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675

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psichomics SUPPA Splicing Alternative Splicing Retained Introns

3.5 years ago noahhelton98 ▴ 20

16 results • Page 1 of 1

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Answer: FilterByExpr low counts with small sample size by Gordon Smyth 50k

It doesn't seem to me that there is necessarily any problem with the analysis. You that there are "too many low-reads" but actually there …

Answer: How to make DGEList and design matrix by edgeR package by Gordon Smyth 50k

Your question is curious because you showed code that made a DGEList and design matrix in your previous post just 15 hours ago. Please h…

Answer: Finding DEGs by using edgeR by Gordon Smyth 50k

I am not clear what you mean that you have already normalized your data. How exactly did you normalize the data? The best way to do an edg…

Answer: Log-cpm values from limma by Gordon Smyth 50k

The log-cpm values from voom() are not free of batch effect. If you want batch-corrected log-cpm values, we recommend cpm() followed by rem…

Comment: Differential peaks that were not identified in diffbind were identified in diseq by ATpoint ★ 4.0k

As expected normalization is **way** off, meaning in simple terms that the cloud is too high. The deep-blue area should be along y=0. Try t…

Votes

Answer: OrgDb for maize

Comment: significant difference of p-values with dream() after updating VariancePartition

How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output

Comment: DEXSeq DEXSeqDataSet count matrix duplication

Comment: Error in champ.load(): The following specified files do not exist

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