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BiomaRt connection error: Could not connect to mysql database ensembl_mart_104
biomaRt connection sql
updated 13 days ago by • 0 • written 15 days ago by ▴ 10
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MakeOrgPackageFromNCBI SQL error
MakeOrgPackageFromNCBI NCBI SQL AnnotationForge
updated 13 months ago by 57k • written 13 months ago by • 0
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Job: Full-time bioinformatics instructor position at Fred Hutch
R shell Python SQL Job
3.4 years ago ematsen ▴ 20
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Job: Harvard Medical School: Biomedical Data Scientist Postdoctoral Associate
biomedical informatics data science python SQL Job
5.4 years ago Doe, Aimee ▴ 40
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Comment: Research fellow in immunology by ATpoint ▴ 640
Try starting a new R session and then load the package again. If that fails then manually install ellipsis version 0.3.2 or greater. By the…
Answer: Creating the correct model to account for paired-samples (patient-effect) help n by Gordon Smyth 43k
In the limma User's Guide, Section 9.4.1 *Paired Samples* covers paired designs. In the edgeR User's Guide, it is Section 3.4.1.
Comment: How to convert .CEL file to .VCF file? by jesus • 0
Thank you! I'd already seen it, but the problem is that I'm using Windows and I think that code is only for Linux. Thanks anyway!
Comment: DESeq2 codes by Ram ▴ 60
DESeq2 is a piece of software that can be used to find statistically significant differential expression in RNAseq datasets. See: https://b…
Comment: DESeq2 codes by Kevin Blighe 3.1k
Hi, I changed the post type to `Question` (you had posted it as `News`). You mean that you want the raw code for DESeq2? - this can be foun…
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Comment: What is the correct use of removeBatchEffect's design parameter
Answer: DESeq2 for allele-specific expression with contrasts between conditions
C: DESeq2 question about use of DESeqDataSetFromTximport() from RSEM data
Comment: Data input for aracne2regulon function in viper package
Comment: DESeq2: NA's in mcols(object)$betaConv
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