Bioconductor Starallele

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starallele phenoTest

updated 14 months ago by James W. MacDonald 67k • written 14 months ago by greeshmathulasi1 • 0

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Answer: DESeq2 Heatmap by swbarnes2 ★ 1.4k

> However, I've been asked why the first column (vehicle/control) isn't > entirely zero on the log fold change (logFC) expression scale. …

Comment: Biomart and ensembl not working? by James W. MacDonald 67k

``` > library(biomaRt) > mart <- useEnsembl("ensembl","hsapiens_gene_ensembl") Ensembl site unresponsive, trying useast mirror > mart Objec…

Comment: Biomart and ensembl not working? by Irene • 0

It seems to be working for mouse but not for human ensembl <- biomaRt::useEnsembl(biomart = "ensembl", dataset = "hsapiens_gene_ensemb…

Answer: Biomart and ensembl not working? by James W. MacDonald 67k

Unfortunately the Ensembl websites can be a bit unstable. The only recourse that I know of is patience and trying later. It appears to be c…

Answer: Unknown gene transcripts after annotatr by James W. MacDonald 67k

Both NCBI and Ensembl are constantly pruning IDs. I would assume those have all been removed. [For example][1]. [1]: https://useast.…

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A: Processing agilent data by limma

A: Linear regression in DESeq2

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