Bioconductor Starr

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Starr Starr

updated 13.1 years ago by zacher@lmb.uni-muenchen.de ▴ 50 • written 13.2 years ago by Feseha Abebe-Akele ▴ 30

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Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr

updated 14.5 years ago by Tobias Straub ▴ 430 • written 14.5 years ago by Noah Dowell ▴ 410

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805

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Normalization Starr Normalization Starr

updated 14.4 years ago by Martin Morgan 25k • written 14.4 years ago by Noah Dowell ▴ 410

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927

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biomaRt Ringo Starr biomaRt Ringo Starr

updated 14.4 years ago by Wolfgang Huber ★ 13k • written 14.4 years ago by Noah Dowell ▴ 410

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889

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Annotation Starr Annotation Starr

updated 14.4 years ago by zacher@lmb.uni-muenchen.de ▴ 50 • written 14.4 years ago by Noah Dowell ▴ 410

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Normalization Starr Normalization Starr

updated 14.0 years ago by Raphael Gottardo ▴ 40 • written 14.0 years ago by Hans-Ulrich Klein ▴ 330

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Yeast ChIPpeakAnno Starr Yeast ChIPpeakAnno Starr

updated 13.9 years ago by Julie Zhu ★ 4.3k • written 13.9 years ago by Noah Dowell ▴ 410

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Normalization vsn Starr Normalization vsn Starr

updated 13.8 years ago by zacher@lmb.uni-muenchen.de ▴ 50 • written 13.8 years ago by Edwin Groot ▴ 230

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GO Yeast tilingArray Starr GO Yeast tilingArray Starr

13.6 years ago Noah Dowell ▴ 410

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826

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GO Starr GO Starr

updated 12.9 years ago by Martin Morgan 25k • written 12.9 years ago by Yongde Bao ▴ 170

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Starr Starr

updated 12.4 years ago by Kasper Daniel Hansen ★ 6.5k • written 12.4 years ago by Guest User ★ 13k

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Ringo affy tilingarray plot starr

8.8 years ago bruce.moran ▴ 30

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994

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Starr Starr

updated 10.1 years ago by Julie Zhu ★ 4.3k • written 10.1 years ago by Paul ▴ 10

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limma ringo starr

8.7 years ago ashubiochem • 0

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Starr Starr

10.1 years ago Julie Zhu ★ 4.3k

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starr chip-chip

7.0 years ago sudhirjadhao2009 • 0

16 results • Page 1 of 1

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Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k

You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.

Comment: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k

Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…

Comment: get BM error by James W. MacDonald 65k

I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…

Comment: get BM error by Fara • 0

Thank you for your response. The primary reason for translating Ensembl IDs into Entrez Gene IDs is to perform KEGG (Kyoto Encyclopedia of…

Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by James W. MacDonald 65k

That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this: ``` gzip -…

Votes

Answer: get BM error

Answer: Use of negative binomial model for exponential decay rate estimation using DESeq

Comment: Different Shrunk Log2FC according with reference

Reproducibility issue with scran together with lapply and BiocParallel

C: SGSeq: moving toward diffex from SGSeq analysis

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