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starr
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1.6k
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tilingArray getting started questions
GO
Yeast
tilingArray
Starr
GO
Yeast
tilingArray
Starr
13.6 years ago
Noah Dowell
▴ 410
0
votes
6
replies
1.5k
views
Question RE: getEnrichedGo in ChIPpeakAnno package
Yeast
ChIPpeakAnno
Starr
Yeast
ChIPpeakAnno
Starr
updated 13.8 years ago by
Julie Zhu
★ 4.3k • written 13.8 years ago by
Noah Dowell
▴ 410
0
votes
3
replies
1.5k
views
ChIP-chip sequence bias not removed
Normalization
vsn
Starr
Normalization
vsn
Starr
updated 13.7 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 13.7 years ago by
Edwin Groot
▴ 230
0
votes
1
reply
1.4k
views
Ringo Plots Only Partially Made
Ringo
affy
tilingarray
plot
starr
8.7 years ago
bruce.moran
▴ 30
0
votes
4
replies
1.2k
views
Reading GFF using Starr
Starr
Starr
updated 13.1 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 13.1 years ago by
Feseha Abebe-Akele
▴ 30
0
votes
1
reply
1.2k
views
Help with Oligo Package: Extracting and Graphing
Transcription
Normalization
Yeast
probe
affy
graph
tilingArray
oligo
pdInfoBuilder
Starr
updated 14.4 years ago by
Tobias Straub
▴ 430 • written 14.4 years ago by
Noah Dowell
▴ 410
0
votes
4
replies
1.1k
views
Two color Nucleosomes ChIP-ChIP data analysis using Ringo package.
limma
ringo
starr
8.6 years ago
ashubiochem
• 0
0
votes
2
replies
1.1k
views
readCelFile function in Starr is crashing R
Starr
Starr
updated 12.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 12.4 years ago by
Guest User
★ 13k
0
votes
1
reply
975
views
Starr package: cmarrt.ma error
Starr
Starr
updated 10.0 years ago by
Julie Zhu
★ 4.3k • written 10.0 years ago by
Paul
▴ 10
0
votes
0
replies
938
views
Starr package: cmarrt.ma error
Starr
Starr
10.0 years ago
Julie Zhu
★ 4.3k
0
votes
1
reply
915
views
Ringo/Starr getProfiles function
biomaRt
Ringo
Starr
biomaRt
Ringo
Starr
updated 14.3 years ago by
Wolfgang Huber
★ 13k • written 14.3 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
881
views
Starr - MAT normalization
Normalization
Starr
Normalization
Starr
updated 13.9 years ago by
Raphael Gottardo
▴ 40 • written 13.9 years ago by
Hans-Ulrich Klein
▴ 330
0
votes
1
reply
875
views
Ringo/Starr getProfiles function
Annotation
Starr
Annotation
Starr
updated 14.3 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 14.3 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
812
views
help with Starr
GO
Starr
GO
Starr
updated 12.8 years ago by
Martin Morgan
25k • written 12.8 years ago by
Yongde Bao
▴ 170
0
votes
1
reply
788
views
Please Help with Starr Package
Normalization
Starr
Normalization
Starr
updated 14.3 years ago by
Martin Morgan
25k • written 14.3 years ago by
Noah Dowell
▴ 410
0
votes
0
replies
762
views
how to analyse chip-chip on normalized data without bpmap file or how to select bpmap file for your data(data downloaded from NCBI geo)
starr
chip-chip
6.9 years ago
sudhirjadhao2009
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Answer: Merging featureCounts output for different species
by
Michael Love
41k
Bioconductor support site is for posting questions about software. Try biostars.
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
Answer: Microarray Limma Model fitting and DEG
by
Gordon Smyth
50k
This dataset seems straightforward to analyse using the original MAS expression values on GEO. MAS expression values are known to be noisy …
Answer: Trimming a section of a scaffold from a genome
by
James W. MacDonald
65k
It's undoubtedly possible, but you don't provide enough information to go on. If I assume you are talking about an existing `BSgenome` pack…
Votes
Answer: DESeq2 "Contrast" option
Answer: error in ChAMP loading file
Circumvent creating .ff files in the working directory when using genotype.Illumina() function
Answer: Problem with maplot {affy} method when using rma {affy} method output as its inp
Answer: Microarray Limma Model fitting and DEG
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