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starr
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how to analyse chip-chip on normalized data without bpmap file or how to select bpmap file for your data(data downloaded from NCBI geo)
starr
chip-chip
6.9 years ago
sudhirjadhao2009
• 0
0
votes
4
replies
1.1k
views
Two color Nucleosomes ChIP-ChIP data analysis using Ringo package.
limma
ringo
starr
8.6 years ago
ashubiochem
• 0
0
votes
1
reply
1.4k
views
Ringo Plots Only Partially Made
Ringo
affy
tilingarray
plot
starr
8.7 years ago
bruce.moran
▴ 30
0
votes
1
reply
976
views
Starr package: cmarrt.ma error
Starr
Starr
updated 10.0 years ago by
Julie Zhu
★ 4.3k • written 10.0 years ago by
Paul
▴ 10
0
votes
0
replies
938
views
Starr package: cmarrt.ma error
Starr
Starr
10.0 years ago
Julie Zhu
★ 4.3k
0
votes
2
replies
1.1k
views
readCelFile function in Starr is crashing R
Starr
Starr
updated 12.4 years ago by
Kasper Daniel Hansen
★ 6.5k • written 12.4 years ago by
Guest User
★ 13k
0
votes
1
reply
812
views
help with Starr
GO
Starr
GO
Starr
updated 12.8 years ago by
Martin Morgan
25k • written 12.8 years ago by
Yongde Bao
▴ 170
0
votes
4
replies
1.2k
views
Reading GFF using Starr
Starr
Starr
updated 13.1 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 13.1 years ago by
Feseha Abebe-Akele
▴ 30
0
votes
1
reply
1.6k
views
tilingArray getting started questions
GO
Yeast
tilingArray
Starr
GO
Yeast
tilingArray
Starr
13.6 years ago
Noah Dowell
▴ 410
0
votes
3
replies
1.5k
views
ChIP-chip sequence bias not removed
Normalization
vsn
Starr
Normalization
vsn
Starr
updated 13.7 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 13.7 years ago by
Edwin Groot
▴ 230
0
votes
6
replies
1.5k
views
Question RE: getEnrichedGo in ChIPpeakAnno package
Yeast
ChIPpeakAnno
Starr
Yeast
ChIPpeakAnno
Starr
updated 13.8 years ago by
Julie Zhu
★ 4.3k • written 13.8 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
881
views
Starr - MAT normalization
Normalization
Starr
Normalization
Starr
updated 13.9 years ago by
Raphael Gottardo
▴ 40 • written 13.9 years ago by
Hans-Ulrich Klein
▴ 330
0
votes
1
reply
877
views
Ringo/Starr getProfiles function
Annotation
Starr
Annotation
Starr
updated 14.3 years ago by
zacher@lmb.uni-muenchen.de
▴ 50 • written 14.3 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
917
views
Ringo/Starr getProfiles function
biomaRt
Ringo
Starr
biomaRt
Ringo
Starr
updated 14.3 years ago by
Wolfgang Huber
★ 13k • written 14.3 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
788
views
Please Help with Starr Package
Normalization
Starr
Normalization
Starr
updated 14.3 years ago by
Martin Morgan
25k • written 14.3 years ago by
Noah Dowell
▴ 410
0
votes
1
reply
1.2k
views
Help with Oligo Package: Extracting and Graphing
Transcription
Normalization
Yeast
probe
affy
graph
tilingArray
oligo
pdInfoBuilder
Starr
updated 14.4 years ago by
Tobias Straub
▴ 430 • written 14.4 years ago by
Noah Dowell
▴ 410
16 results • Page
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
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Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
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Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
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Yes that is correct
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It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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transcript name mapping between human and mouse
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Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
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