Biostar Starr

Showing : starr • reset

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542

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starr chip-chip

5.1 years ago sudhirjadhao2009 • 0

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797

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limma ringo starr

6.8 years ago • updated 6.7 years ago ashubiochem • 0

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896

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Ringo affy tilingarray plot starr

6.9 years ago bruce.moran ▴ 30

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643

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Starr Starr

updated 8.1 years ago by Julie Zhu ★ 4.3k • written 8.1 years ago by Paul ▴ 10

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689

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Starr Starr

8.1 years ago Julie Zhu ★ 4.3k

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810

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Starr Starr

updated 10.5 years ago by Kasper Daniel Hansen 6.5k • written 10.5 years ago by Guest User ★ 12k

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627

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GO Starr GO Starr

updated 11.0 years ago by Martin Morgan 25k • written 11.0 years ago by Yongde Bao ▴ 170

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808

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Starr Starr

updated 11.2 years ago by zacher@lmb.uni-muenchen.de ▴ 50 • written 11.2 years ago by Feseha Abebe-Akele ▴ 30

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1.3k

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GO Yeast tilingArray Starr GO Yeast tilingArray Starr

11.7 years ago Noah Dowell ▴ 410

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993

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Normalization vsn Starr Normalization vsn Starr

updated 11.8 years ago by zacher@lmb.uni-muenchen.de ▴ 50 • written 11.8 years ago by Edwin Groot ▴ 230

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956

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Yeast ChIPpeakAnno Starr Yeast ChIPpeakAnno Starr

updated 11.9 years ago by Julie Zhu ★ 4.3k • written 11.9 years ago by Noah Dowell ▴ 410

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603

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Normalization Starr Normalization Starr

updated 12.0 years ago by Raphael Gottardo ▴ 40 • written 12.0 years ago by Hans-Ulrich Klein ▴ 330

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638

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Annotation Starr Annotation Starr

updated 12.4 years ago by zacher@lmb.uni-muenchen.de ▴ 50 • written 12.4 years ago by Noah Dowell ▴ 410

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672

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biomaRt Ringo Starr biomaRt Ringo Starr

updated 12.4 years ago by Wolfgang Huber 13k • written 12.4 years ago by Noah Dowell ▴ 410

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593

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Normalization Starr Normalization Starr

updated 12.4 years ago by Martin Morgan 25k • written 12.4 years ago by Noah Dowell ▴ 410

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861

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Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr

updated 12.5 years ago by Tobias Straub ▴ 430 • written 12.5 years ago by Noah Dowell ▴ 410

16 results • Page 1 of 1

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Replies

Comment: Quantile Normalization after rma or not? by Yang Shi • 0

Thanks you so much sir! But I'm still confused with the boxplot showing here. Why oligo::rma could not get the plot like limma::normalizeBe…

Answer: how to understand cpm=1 and how filterByExpr works? by gowthamee • 0

I found the following two articles very helpful in explaining the functions "cpm" and "filterByExpr" Article#1: From reads to genes to pat…

Comment: different results in DESeq2 when comparing groups in two ways by zohreh.fazelan • 0

Thank you for your response. But I have few comparisons in which there are more significantly expressed genes in the socond way compared to…

Comment: lmFit, continuous exposure, adjustment covariates by Gordon Smyth 45k

Your code `t(dat[43:ncol(dat)]` is not even syntactically correct. It could not possibly run in R. You need to create an expression matrix…

Comment: Handling of missing values in limma by Gordon Smyth 45k

limma uses all the observations. There's nothing complicated about it. limma does not remove any persons from the analysis. I did not tel…

Votes

A: redundant probe sets in Affymetrix HG-U219

Answer: Quantile Normalization after rma or not?

Answer: Using featureCounts and downloading Rsubread

Answer: different results in DESeq2 when comparing groups in two ways

Awards • All

Scholar to James W. MacDonald 59k