Biostar Starr

Showing : starr • reset

votes

895

views

Ringo affy tilingarray plot starr

6.8 years ago bruce.moran ▴ 30

votes

861

views

Transcription Normalization Yeast probe affy graph tilingArray oligo pdInfoBuilder Starr

updated 12.5 years ago by Tobias Straub ▴ 430 • written 12.5 years ago by Noah Dowell ▴ 410

votes

591

views

Normalization Starr Normalization Starr

updated 12.4 years ago by Martin Morgan 25k • written 12.4 years ago by Noah Dowell ▴ 410

votes

668

views

biomaRt Ringo Starr biomaRt Ringo Starr

updated 12.4 years ago by Wolfgang Huber 13k • written 12.4 years ago by Noah Dowell ▴ 410

votes

637

views

Annotation Starr Annotation Starr

updated 12.4 years ago by zacher@lmb.uni-muenchen.de ▴ 50 • written 12.4 years ago by Noah Dowell ▴ 410

votes

603

views

Normalization Starr Normalization Starr

updated 12.0 years ago by Raphael Gottardo ▴ 40 • written 12.0 years ago by Hans-Ulrich Klein ▴ 330

votes

replies

956

views

Yeast ChIPpeakAnno Starr Yeast ChIPpeakAnno Starr

updated 11.9 years ago by Julie Zhu ★ 4.3k • written 11.9 years ago by Noah Dowell ▴ 410

votes

replies

993

views

Normalization vsn Starr Normalization vsn Starr

updated 11.8 years ago by zacher@lmb.uni-muenchen.de ▴ 50 • written 11.8 years ago by Edwin Groot ▴ 230

votes

1.3k

views

GO Yeast tilingArray Starr GO Yeast tilingArray Starr

11.7 years ago Noah Dowell ▴ 410

votes

replies

807

views

Starr Starr

updated 11.2 years ago by zacher@lmb.uni-muenchen.de ▴ 50 • written 11.2 years ago by Feseha Abebe-Akele ▴ 30

votes

627

views

GO Starr GO Starr

updated 11.0 years ago by Martin Morgan 25k • written 11.0 years ago by Yongde Bao ▴ 170

votes

replies

809

views

Starr Starr

updated 10.5 years ago by Kasper Daniel Hansen 6.5k • written 10.5 years ago by Guest User ★ 12k

votes

replies

687

views

Starr Starr

8.1 years ago Julie Zhu ★ 4.3k

votes

642

views

Starr Starr

updated 8.1 years ago by Julie Zhu ★ 4.3k • written 8.1 years ago by Paul ▴ 10

votes

replies

796

views

limma ringo starr

6.8 years ago • updated 6.7 years ago ashubiochem • 0

votes

replies

541

views

starr chip-chip

5.0 years ago sudhirjadhao2009 • 0

16 results • Page 1 of 1

Recent ...

Replies

Comment: Transcript-level differential expression using DESeq2 by Michael Love 36k

This is not an issue, see the vignette which talks about this phenomenon.

Answer: DESeq2, Calculate the size factor by using median-of-ratio by Michael Love 36k

I wouldn't recommend the original suggestion -- I'm not sure what exactly is the concern here, DESeq2 adapts to the higher dispersion in th…

Comment: EnrichGO not working with db created from annotationhub by Lucía • 0

How can I find out the annotation file used by annotation hub? Like exactly what gtf/gff file and from where?

Comment: EnrichGO not working with db created from annotationhub by Lucía • 0

Hi, thanks so much for your reply. This is the output of the commands you asked about: head( as.character(unique(annotated_significan…

Comment: Methods for removing unexpressed probes of Human Transcriptome Array HTA 2.0 by Yang Shi • 0

Perfect answer! This questions troubled me for a long time. Thanks again and for your quick and detailed reply.

Votes

Answer: Use MulticoreParam under BatchtoolsParam

Answer: Variance explained (coefficient of determination) in edgeR

HTSeq Counts no longer available

Comment: Problem converting transcript to genomic coordinates with Annotation Hub

Comment: Separate exogenous from endogenous transcripts using Salmon RNAseq DTU

Awards • All

Popular Question to Johannes Rainer ★ 1.9k