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Job:
Statistics Lectureships at St Andrews
JobPosting
computational
statistics
9 weeks ago
Andy Lynch
▴ 120
0
votes
0
replies
216
views
multipollutant models
statistics
Regression
r
limma
4 months ago
Jitendra
▴ 10
0
votes
1
reply
318
views
DEseq2 : Complex design with a mixture of male and female mice
statistics
DESeq2
updated 4 months ago by
Michael Love
41k • written 5 months ago by
lionel.spinelli
• 0
1
vote
1
reply
345
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Further analysis after limma regression output
statistics
Epigenetics
limma
updated 7 months ago by
James W. MacDonald
65k • written 7 months ago by
Jitendra
▴ 10
25
votes
7
replies
11k
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Effect of lfcThreshold on p-value in DESeq2
deseq2
rnaseq
statistics
updated 6 months ago by
camillab.
▴ 10 • written 6.5 years ago by
Russ Fraser
▴ 30
5 results • Page
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Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
Hello James, Thank you very much for your answer and taking the time to read my post. I understand your remark, but isn't the approach o…
Comment: PCA plot suggestions
by
JKim
• 0
cross post: https://www.biostars.org/p/9593486/
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
James W. MacDonald
65k
You cannot correct for technical variability due to batch if samples are nested in batch. The technical and biological differences are comp…
Comment: Opposite sign of LFC in count plots of DEGs (DESeq2)
by
James W. MacDonald
65k
You will need to show some reproducible code for anybody to track this down. Please note that `DESeq2` has been used by thousands of people…
Comment: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
by
Alexandre
• 0
My code for the sessionInfo() . If the pictures are too big, I will downsize them. THank you again for reading my post ! ```r > sessionInf…
Votes
Answer: Batch/method effect correction on a cohort of patients with RUVseq and DESeq2
Answer: Use of negative binomial model for exponential decay rate estimation using DESeq
C: null model and DEXSeqDataSet object in DEXSEQ
A: Are published RNA seq data analyses often wrong in calculating p-values and FDR?
A: How to explain how DESeq2 works to someone with zero bioinformatics background?
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