written 16 months ago by
Jesus
•
0
3
votes
5
replies
602
views
0
votes
3
replies
319
views
updated 3 months ago by
Sean Davis
21k
•
written 4 months ago by
nabiyogesh
▴
10
0
votes
0
replies
169
views
0
votes
2
replies
54
views
15 hours ago • updated 7 hours ago
nabiyogesh
▴
10
Recent ...
Replies
Answer: Question on RNA-Seq single sample data analysis in EdgeR
by
Gordon Smyth
45k
Yes, it is necessary to run `calcNormFactors`, as it always is for any DE analysis. It would also be sensible to filter non-expressed genes…
Comment: How to run GSVA with partially NA genes
by
blakebowen
•
0
I was a little worried about discarding so many genes, although sounds like this can't be helped. The results are still quite useful so I t…
Comment: ashr vs apeglm for interaction data
by
Ali Barry
▴
30
Thanks, I'll trying playing a bit there. I have done some minor filtering already (requiring at least 5 counts in 10% of my samples, across…
Comment: ashr vs apeglm for interaction data
by
Michael Love
37k
I see why apeglm is conservative— the dispersion is very high within group.
An idea would be to use ashr but do some additional filtering …
Comment: How to figure out the FC value from Limma
by
ATpoint
★
1.2k
That’s an Excel problem, not a GEO/R problem or related to limma and Bioconductor.
Awards
• All
Popular Question to
Gordon Smyth
45k
Popular Question to
Robert Castelo
★
2.9k
Popular Question to
andrebolerbarros
▴
10
Scholar to
James W. MacDonald
59k
Scholar to
Guido Hooiveld
★
3.2k
Locations
• All
WEHI, Melbourne, Australia, 10 minutes ago
Qatar, 11 minutes ago
Mexico, 40 minutes ago
China, 1 hour ago
Australia, 1 hour ago
WEHI, Melbourne, Australia, 10 minutes ago
Qatar, 11 minutes ago
Mexico, 40 minutes ago
China, 1 hour ago
Australia, 1 hour ago
Traffic: 285 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6