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Is it appropriate to apply linear mixed models to Voom transformed data?
stats
r
RNASeqData
limma
voom
5 months ago
pl23
• 0
3
votes
4
replies
2.0k
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R session aborted: prcomp
Biobase
stats
updated 3.1 years ago by
Kevin Blighe
★ 3.9k • written 3.1 years ago by
Gero
• 0
0
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0
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1.3k
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Job:
Two Post-doctoral Positions at University of Campinas
post-doc
job
stats
computational biology
Job
7.7 years ago • updated 7.6 years ago
Benilton Carvalho
★ 4.3k
0
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0
replies
1.4k
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Job:
Data Scientist / Bioinformatician / Statistician at University of California
R
python
stats
bioinformatics
perl
Job
7.7 years ago
clif.duhn
• 0
5
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6
replies
1.4k
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getting a matrix with diagonal =1
stats
updated 8.3 years ago by
Aaron Lun
★ 28k • written 8.3 years ago by
Angel
▴ 40
3
votes
3
replies
2.2k
views
ribosome profiling analysis with different dispersions
deseq2
linear model
ribosome profiling
stats
updated 8.7 years ago by
Ryan C. Thompson
★ 7.9k • written 8.7 years ago by
Jake
▴ 90
2
votes
2
replies
2.2k
views
Memory management in R
stats
updated 9.1 years ago by
Martin Morgan
25k • written 9.1 years ago by
mrk.carty
▴ 30
2
votes
5
replies
1.6k
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Download the stats of Bioconductor
bioconductor
stats
9.3 years ago
Lluís Revilla Sancho
▴ 730
8 results • Page
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Comment: How to tell and visualize up/down regulation of pathways from clusterprofiler gs
by
Guangchuang Yu
★ 1.2k
an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
Comment: Trying to use enrichGO
by
Guido Hooiveld
★ 3.9k
Nothing would prevent you from using the `enrichGO` function (or any other function for over-representation analysis [ORA]) with only 14 ge…
Comment: Different Shrunk Log2FC according with reference
by
andrebolerbarros
▴ 20
Thanks @atpoint for your answer! The issue with that is then it severely hinders the possiblity of using `apeglm` shrinking approach, sinc…
Comment: featureCounts reports an error:"featureCounts: input-files.c:2890: SAM_pairer_ge
by
ATpoint
★ 4.0k
The error that is relevant is `Aborted (core dumped)`. This line 2890 refers to the C source code that throws the error, it is not relevant…
Answer: Different Shrunk Log2FC according with reference
by
ATpoint
★ 4.0k
Please see: https://support.bioconductor.org/p/p134551/ I asked basically the same before. In short, reference level might have an influ…
Votes
C: SGSeq: moving toward diffex from SGSeq analysis
DEXSeq-Error in FUN(X[[i]], ...) : subscript out of bounds
Subset DEXSeqDataSet In DEXSeq
How to get all possible comparisons in DiffBind
Comment: get BM error
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