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Is it appropriate to apply linear mixed models to Voom transformed data?
stats
r
RNASeqData
limma
voom
4 months ago
pl23
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R session aborted: prcomp
Biobase
stats
updated 3.0 years ago by
Kevin Blighe
★ 3.9k • written 3.0 years ago by
Gero
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Job:
Two Post-doctoral Positions at University of Campinas
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7.6 years ago
Benilton Carvalho
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Job:
Data Scientist / Bioinformatician / Statistician at University of California
R
python
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7.7 years ago
clif.duhn
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getting a matrix with diagonal =1
stats
updated 8.2 years ago by
Aaron Lun
★ 28k • written 8.2 years ago by
Angel
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ribosome profiling analysis with different dispersions
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linear model
ribosome profiling
stats
updated 8.6 years ago by
Ryan C. Thompson
★ 7.9k • written 8.6 years ago by
Jake
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Memory management in R
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updated 9.0 years ago by
Martin Morgan
25k • written 9.0 years ago by
mrk.carty
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Download the stats of Bioconductor
bioconductor
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9.2 years ago
Lluís Revilla Sancho
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Answer: New genes that did not exist in dds object suddenly showed up after degPatterns
by
Michael Love
41k
May be documented by the software you are using? https://github.com/lpantano/DEGreport
Answer: Doing comparison of RNA-seq data using Deseq2
by
Michael Love
41k
Take a look at our workflow, this starts from a beginner's level. You could export from Excel using CSV or TSV, then read into R. htt…
Answer: WGCNA: analysis of complex trait associations with regressions
by
James W. MacDonald
65k
This support site is meant to help people with questions about Bioconductor packages (WGCNA is not a Bioconductor package). You might try o…
Comment: miRTarRnaseq library
by
mercedeh.movassagh
▴ 10
Yes that is correct
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
by
Gordon Smyth
50k
It is the minimum group size rather than the total number of samples that is relevant. `min.prop` is more a biological parameter rather th…
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A: Error object and replacement value dimnames differ, when changing column names o
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
DESeq2 normalization vs VST vs rlog
Answer: DESeq2 "Contrast" option
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