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Is it appropriate to apply linear mixed models to Voom transformed data?
stats
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RNASeqData
limma
voom
4 months ago
pl23
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R session aborted: prcomp
Biobase
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updated 3.0 years ago by
Kevin Blighe
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Gero
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Job:
Two Post-doctoral Positions at University of Campinas
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7.7 years ago • updated 7.6 years ago
Benilton Carvalho
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Job:
Data Scientist / Bioinformatician / Statistician at University of California
R
python
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7.7 years ago
clif.duhn
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getting a matrix with diagonal =1
stats
updated 8.3 years ago by
Aaron Lun
★ 28k • written 8.3 years ago by
Angel
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ribosome profiling analysis with different dispersions
deseq2
linear model
ribosome profiling
stats
updated 8.7 years ago by
Ryan C. Thompson
★ 7.9k • written 8.7 years ago by
Jake
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Memory management in R
stats
updated 9.1 years ago by
Martin Morgan
25k • written 9.1 years ago by
mrk.carty
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Download the stats of Bioconductor
bioconductor
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9.3 years ago
Lluís Revilla Sancho
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Comment: DESeq filtering specific to contrasts
by
Michael Love
41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts
by
Carlin95
• 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size
by
Jonathan
▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa
by
Seyram M.
• 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`
by
isaac.vock
• 0
Thank you for your response. I can confirm that setting `-t exon` and/or removing `-s 1` and adding `-O` has no impact on the number of suc…
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Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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