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strand
•
reset
0
votes
1
reply
872
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Gviz, keeping strand information while zooming in
Gviz
strand
3.5 years ago
svenbioinf
• 0
2
votes
8
replies
2.4k
views
comparing strand-specific counts to unstranded counts
rnaseq
strand
deseq2
6.5 years ago
lirongrossmann
▴ 80
0
votes
0
replies
899
views
Combined strand specific and unstranded samples
strand
rnaseq
differential gene expression
batch effect
counts
6.6 years ago
lirongrossmann
▴ 80
4
votes
5
replies
1.4k
views
Warning: missing reverse strand option in easyRNASeq.
easyrnaseq
rnaseq
strand
updated 6.9 years ago by
Hervé Pagès
16k • written 6.9 years ago by
Michael Dondrup
▴ 10
2
votes
1
reply
1.2k
views
Bioconductor utility with novel projects
Granges
IRanges
gff
import.gff3
strand
updated 9.6 years ago by
Hervé Pagès
16k • written 9.6 years ago by
topher.hamm
• 0
5 results • Page
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Answer: Citation for edgeR user guide
by
Gordon Smyth
50k
Thanks for thinking about how to cite edgeR. Citations are indeed the main way by which the edgeR authors get credit for their work. The Us…
Comment: DESeq2 output used for PCA plot on R studio
by
swbarnes2
★ 1.3k
You are just making up data? What is the point of this exercise?
Comment: How to retrieve gene ontology GO class?
by
James W. MacDonald
65k
What do you mean by 'the information'? Do you have things in particular that you want?
Comment: minfi::read.metharray.exp
by
clacarion
• 0
I think its work with `read.metharray.sheet` ```r > sheet <- read.metharray.sheet("/Users/clarachretienneau/Desktop/clock_epigenetic/PJ120…
Comment: minfi::read.metharray.exp
by
clacarion
• 0
Thank you for your response Basti ! I add all the idat files in a unique folder called "idat" and add it in my path ```r > list.files("…
Votes
Answer: Citation for edgeR user guide
Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)
Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.
Answer: minfi::read.metharray.exp
Comment: Trying to use enrichGO
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