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2.3 years ago • updated 2.2 years ago
Wolfgang RAFFELSBERGER
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Comment: Error for AnnotationForge makeOrgPackageFromNCBI function
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That's weird. I don't have any problem at all generating the `OrgDb` on my box. How big is the gene2pubmed.gz file? I get this:
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gzip -…
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The genes you present are orthologous mappings from D. rerio to other teleost fishes, so it is probably going to be difficult to map to NCB…
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You can also use a combination of the `org.Hs.eg.db` and `GO.db` packages.
```
> library(GO.db)
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I took a look and the posterior width for these (fairly rare) examples overlaps zero. So the posterior when it disagrees is not narrow.
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an example is also presented in <https://pubmed.ncbi.nlm.nih.gov/34557778/>.
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