Showing : survival • reset
0
votes
4
replies
271
views
I need to calculate the survival rate of TCGA databases
TCGAbiolinks Survival
updated 10 weeks ago by ▴ 730 • written 10 weeks ago by • 0
0
votes
0
replies
533
views
KM Plot for gene of interest (e.g. TP53) using TCGA-PAAD dataset
Survival TCGAbiolinks R PAAD
13 months ago Manav • 0
0
votes
0
replies
531
views
plots in gwasurvivr
gwasurvivr r survival cox
3.6 years ago laura.martinez.campelo • 0
0
votes
6
replies
5.2k
views
Issues installing DESeq2, installation path not writable, package: survival
deseq2 survival
updated 17 months ago by • 0 • written 3.8 years ago by • 0
1
vote
0
replies
1.4k
views
How to compute 95%CI after having C-index value?
survival nomogram cph 95CI
4.2 years ago huynguyen96.dnu ▴ 30
0
votes
0
replies
570
views
Estimating survival function with left truncation?
Icens Survival Left-truncation Interval-Censored
updated 4.7 years ago by 25k • written 4.7 years ago by • 0
4
votes
7
replies
4.0k
views
DESeq2 for survival analysis
deseq2 survival rlog transformation
6.4 years ago array chip ▴ 420
0
votes
0
replies
1.1k
views
Need help determine optimal argument value on a rbsurv model
rbsurv microarray survival
6.5 years ago JackieMe • 0
2
votes
1
reply
1.6k
views
error/warning message while doing kmTCGA survival plot
RTCGA survival kmTCGA
updated 7.0 years ago by ▴ 10 • written 7.1 years ago by ▴ 30
0
votes
0
replies
853
views
Error with Reportingtools using ENSEMBL gene ID
reporting tools modifyDF survival
7.8 years ago cagenet34 ▴ 20
0
votes
1
reply
1.5k
views
simpleaffy segmentation fault
Survival probe genefilter affy affyio Survival probe genefilter affy affyio
updated 8.9 years ago by • 0 • written 17.3 years ago by ▴ 170
0
votes
1
reply
2.8k
views
CanceR: Survival plots
cancer gui survival Kaplan-Meier
9.1 years ago • updated 9.0 years ago kmezhoud ▴ 10
0
votes
1
reply
1.6k
views
[R] freetype 2.5.2, problem with the survival package, build R 2.15.x with gcc 4.8.x
Regression Survival snpStats Regression Survival snpStats
10.4 years ago David Winsemius ▴ 40
0
votes
2
replies
4.6k
views
Problem installing \'survival\' package/ Fix request + other options?
Survival Survival
updated 10.8 years ago by 65k • written 10.8 years ago by ★ 13k
0
votes
1
reply
1.6k
views
Fwd: feature weights in 'superpc' package
Survival ASSIGN Survival ASSIGN
updated 11.0 years ago by ★ 4.2k • written 11.0 years ago by ▴ 10
0
votes
10
replies
2.4k
views
assignChromosomeRegion in 2.6.0 ChIPpeakAnno
Microarray Annotation GO Network Regression Survival Infrastructure Escherichia coli ROC
11.1 years ago Julie Zhu ★ 4.3k
0
votes
0
replies
3.8k
views
ComBat
Transcription Genetics Pathways Network Survival Cancer Breast Colon Kidney Leukemia HIV
11.5 years ago SSc Array Core ▴ 10
0
votes
1
reply
3.3k
views
undefined columns selected error when using bagging{ipred}
Survival Survival
updated 11.6 years ago by ★ 6.8k • written 11.6 years ago by ★ 13k
0
votes
2
replies
1.8k
views
Kaplan Meier curve
Survival Survival
updated 11.8 years ago by ★ 2.0k • written 11.8 years ago by ▴ 200
0
votes
0
replies
2.1k
views
survival prediction from multiple genes
Survival Ovarian Survival Ovarian
12.1 years ago Ahmet ZEHIR ▴ 50
0
votes
0
replies
990
views
MLInterfaces, CMA, or Caret for censored survival?
Survival Survival
12.3 years ago Levi Waldron ▴ 10
0
votes
0
replies
966
views
globaltest 5.6.1 bug fix
Survival globaltest Survival globaltest
12.8 years ago Goeman, J.J. MSTAT ▴ 150
0
votes
1
reply
1.2k
views
cox PH model - KM curve
Survival phenoTest Survival phenoTest
updated 12.8 years ago by ★ 2.0k • written 12.8 years ago by ▴ 330
0
votes
3
replies
1.9k
views
[Bioc-sig-seq] Bioconductor 2.8 is released
SNP Sequencing miRNA Microarray Annotation Normalization Pathways Preprocessing Survival
updated 13.0 years ago by ▴ 310 • written 13.0 years ago by ★ 8.2k
0
votes
0
replies
907
views
booklet on using R for biomedical statistics
Survival Survival
13.3 years ago Coghlan, Avril ▴ 190
0
votes
0
replies
990
views
globaltest 5.0.2
Survival globaltest Survival globaltest
14.3 years ago Goeman, J.J. MSTAT ▴ 150
0
votes
0
replies
937
views
2009 Courses***R/S-PLUS Advanced & Fundamentals - January 2009. Also check out our New&Emerging Courses.
Clustering Survival Clustering Survival
15.3 years ago sue@xlsolutions-corp.com ▴ 570
0
votes
1
reply
2.3k
views
forward conditional Cox and logistic regression
Genetics Regression Survival Genetics Regression Survival
updated 15.4 years ago by ★ 2.3k • written 15.4 years ago by ▴ 130
0
votes
2
replies
1.2k
views
applying coxfilter after LIMMA
Survival Cancer limma Survival Cancer limma
updated 15.5 years ago by 65k • written 15.5 years ago by ▴ 330
0
votes
3
replies
2.1k
views
gene expression data followup
Survival Cancer Survival Cancer
updated 15.5 years ago by 65k • written 15.5 years ago by ▴ 330
0
votes
3
replies
1.6k
views
Bioconductor 2.3 is released
aCGH Sequencing miRNA Microarray Visualization Bayesian Classification Survival Yeast LPE
15.5 years ago Patrick Aboyoun ★ 1.6k
0
votes
0
replies
1.1k
views
affycoretools vennSelect problem
Annotation GO Survival probe annotate genefilter affy graph limma gcrma annaffy RBGL
15.8 years ago Nick Henriquez ▴ 20
0
votes
2
replies
1.2k
views
affycoretools vennSelect problem
GO Survival annotate genefilter affy graph gcrma annaffy RBGL GOstats biomaRt affyio
updated 15.8 years ago by 65k • written 15.8 years ago by ▴ 30
0
votes
2
replies
1.4k
views
'Factorial Design' package question
Survival cdf multtest affy factDesign biomaRt Survival cdf multtest affy factDesign
15.9 years ago Glazko, Galina ▴ 350
0
votes
0
replies
1.9k
views
Significance Analysis of Microarrays (SAM)
Survival Survival
16.0 years ago Eleni Christodoulou ▴ 150
0
votes
0
replies
1.2k
views
SECOND ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray Annotation Normalization GO Visualization Classification Clustering Survival GO
16.3 years ago Ana Conesa ▴ 340
0
votes
0
replies
1.1k
views
Inf values using SAM (package=siggenes)
Annotation Survival Cancer genefilter affy limma maDB affyio Annotation Survival Cancer
16.3 years ago Holger Schwender ▴ 900
0
votes
0
replies
1.1k
views
Inf values using SAM (package=siggenes)
Survival Cancer affy limma maDB affyio Survival Cancer affy limma maDB affyio
16.3 years ago Julian Lee ▴ 140
0
votes
0
replies
1.1k
views
MTP error
GO Survival multtest affy affydata annaffy affyPLM affyio GO Survival multtest affy
16.5 years ago Boel Brynedal ▴ 200
0
votes
0
replies
1.3k
views
FIRST ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray Annotation Normalization GO Visualization Classification Clustering Survival GO
16.5 years ago Ana Conesa ▴ 340
0
votes
1
reply
991
views
combining data from two R arrays
GO Survival annotate genefilter vsn tilingArray GO Survival annotate genefilter vsn
16.6 years ago Richard Harrison ▴ 70
0
votes
4
replies
1.4k
views
running time of snapCGH processCGH and runDNAcopy
aCGH Survival CGH annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH aCGH
updated 16.6 years ago by ▴ 230 • written 16.6 years ago by ▴ 110
0
votes
2
replies
1.2k
views
Chromosome 23 and 24 dropped after run snapCGH processCGH
aCGH Survival Cancer annotate genefilter affy DNAcopy aCGH GLAD tilingArray snapCGH
updated 16.6 years ago by ▴ 40 • written 16.6 years ago by ▴ 110
0
votes
2
replies
1.1k
views
vsm2
Survival geneplotter affy vsn limma affyio Survival geneplotter affy vsn limma affyio
updated 16.6 years ago by ★ 13k • written 16.6 years ago by ▴ 70
0
votes
0
replies
1.1k
views
code for technical replicates in Limma with affy
Survival cdf annotate affy limma gcrma matchprobes affyio Survival cdf annotate affy
16.6 years ago Richard Friedman ★ 2.0k
0
votes
2
replies
1.3k
views
problem with probes2tableBM
Annotation GO Survival hgu133a2 annotate genefilter affy graph gcrma matchprobes GOstats
updated 16.6 years ago by ▴ 500 • written 16.6 years ago by ▴ 510
0
votes
0
replies
944
views
problem with function to interrogate x:Map (exonmap)
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
16.6 years ago Wolfgang Raffelsberger ▴ 160
0
votes
7
replies
1.7k
views
problem with GOstats, developmental version?
GO Survival hgu95av2 annotate affy affydata graph Rgraphviz limma gcrma matchprobes GO
updated 16.6 years ago by ★ 7.4k • written 16.6 years ago by ★ 2.2k
0
votes
4
replies
1.3k
views
problems rma() with mouse exon affy data in exonmap package
Survival cdf genefilter affy simpleaffy plier exonmap Survival cdf genefilter affy
updated 16.7 years ago by 65k • written 16.7 years ago by ▴ 20
0
votes
1
reply
1.1k
views
Exonmap mapping problems
Survival genefilter affy plier affyio exonmap Survival genefilter affy plier affyio
updated 16.7 years ago by ▴ 120 • written 16.7 years ago by ▴ 10
50 results • Page 1 of 1
Recent ...
Replies
Answer: DESEQ2 IHW and Apelgm method for Shrinkage (adding s values to FDR) by Michael Love 41k
> I got many p values that had "1.000000e+00" and padj "1" and stat of "0" when I added the Log threshold of LFC >1 and LFC < -1...is this …
Comment: Trying to use enrichGO by fernanda.backsouza ▴ 10
With all my love, thank you Guido, GOxploreR beeing a big ally for me. I don't know how to be grateful right now.
Comment: DESeq2 output used for PCA plot on R studio by swbarnes2 ★ 1.3k
You didn't generate it with an experiment, you made it up: Your PCA doesn't look like a good RNASeq experiment, because it's not.
Answer: Opposite sign of LFC in count plots of DEGs (DESeq2) by swbarnes2 ★ 1.3k
Your contrast is comparing LGR5 to Homeostasis. The bottom 2 are fine, it's the top one that is wrong. Are you sure this step isn't misla…
Comment: get BM error by James W. MacDonald 65k
I believe you need NCBI Gene IDs for KEGG, in which case you may need to map. The three genes you have shown here don't map, and of those t…
Votes
C: when to apply quantile normalization with voom in limma/voom framework with RNA-
A: How to know if I should use voomWithQualityWeights() or not?
A: Weird results (ribosomal proteins / Y-linked genes) in limma/voom
Answer: Log-cpm values from limma
Answer: Log-cpm values from limma
Awards • All
Teacher to Gordon Smyth 50k
Popular Question to Chris • 0
Supporter to Jonathan ▴ 10
Popular Question to Bine ▴ 40
Scholar to ATpoint ★ 4.0k
Locations • All
United States, 7 minutes ago
France, 8 minutes ago
WEHI, Melbourne, Australia, 31 minutes ago
Brazil, 1 hour ago
Melbourne, Australia, 1 hour ago
Traffic: 669 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6