Showing : survival • reset
4
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7
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DESeq2 for survival analysis
deseq2 survival rlog transformation
6.4 years ago array chip ▴ 420
2
votes
1
reply
1.6k
views
error/warning message while doing kmTCGA survival plot
RTCGA survival kmTCGA
updated 7.0 years ago by ▴ 10 • written 7.1 years ago by ▴ 30
1
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0
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1.4k
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How to compute 95%CI after having C-index value?
survival nomogram cph 95CI
4.2 years ago huynguyen96.dnu ▴ 30
0
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5
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1.6k
views
Importing CDF file for custom array using makecdfenv
Microarray GO Survival Cancer cdf Biobase annotate genefilter affy graph makecdfenv GO
updated 17.4 years ago by ▴ 20 • written 17.5 years ago by ★ 2.2k
0
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0
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1.1k
views
BioC 2.0 is available
SNP Microarray Genetics Annotation Visualization Bayesian Survival GUI Cancer adme16cod
17.0 years ago Seth Falcon ★ 7.4k
0
votes
9
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1.8k
views
problem with duplicateCorrelation and ExpressionSet objects
GO Survival cdf Biobase graph limma gcrma annaffy affyPLM simpleaffy biomaRt Category
updated 16.9 years ago by ★ 7.4k • written 16.9 years ago by ★ 2.2k
0
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2
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1.2k
views
simpleaffy and yeast2cdf problems
Survival cdf genefilter affy simpleaffy Survival cdf genefilter affy simpleaffy
updated 17.3 years ago by ▴ 160 • written 17.3 years ago by ▴ 50
0
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0
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1.2k
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SECOND ANNOUNCEMENT: IV International Course on Microarray Data Analysis
Microarray Annotation Normalization GO Visualization Classification Clustering Survival GO
16.3 years ago Ana Conesa ▴ 340
0
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1
reply
3.3k
views
undefined columns selected error when using bagging{ipred}
Survival Survival
updated 11.6 years ago by ★ 6.8k • written 11.6 years ago by ★ 13k
0
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8
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2.0k
views
AnnBuilder and Kegg
Pathways GO Survival Cancer Organism annotate affydata vsn AnnBuilder globaltest GO vsn
updated 17.4 years ago by ▴ 190 • written 17.4 years ago by ★ 2.9k
0
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1
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1.3k
views
Job Posting in Biostatistics/Statistics
Bayesian Survival Cancer PROcess ASSET Bayesian Survival Cancer PROcess ASSET
updated 21.4 years ago by ▴ 80 • written 21.4 years ago by ▴ 10
0
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0
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724
views
Off topic: predoctoral grant
Regression Survival Cancer Regression Survival Cancer
20.6 years ago Ramon Diaz ★ 1.1k
0
votes
1
reply
719
views
just.gcrma and gcrma
Survival Cancer Lung Survival Cancer Lung
updated 20.0 years ago by 65k • written 20.0 years ago by ▴ 550
0
votes
1
reply
912
views
New package
Survival Survival
19.9 years ago • updated 19.8 years ago Jeff Gentry ★ 3.9k
0
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0
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882
views
SAM - survival analysis
Survival Survival
19.8 years ago Holger Schwender ▴ 900
0
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2
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1.5k
views
problem loading affycoretools
Survival hgu95av2 Biobase Ruuid annotate genefilter multtest affydata graph limma gcrma
17.7 years ago Jenny Drnevich ★ 2.2k
0
votes
0
replies
782
views
how to check reference quality?
Microarray Preprocessing Survival limma Microarray Preprocessing Survival limma
19.2 years ago Silvano Piazza ▴ 50
0
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0
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1.1k
views
globaltest procedure
Pathways Survival globaltest Pathways Survival globaltest
19.1 years ago Goeman, J.J. MSTAT ▴ 150
0
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3
replies
832
views
multtest dependencies
Survival genefilter multtest reposTools Survival genefilter multtest reposTools
19.1 years ago Francois Pepin ★ 1.3k
0
votes
0
replies
853
views
question about multtest v.1.5.2
Survival genefilter multtest reposTools Survival genefilter multtest reposTools
19.1 years ago ivan.borozan@utoronto.ca ▴ 80
0
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0
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1.1k
views
New CRAN package `coin'
Survival Survival
18.9 years ago Torsten Hothorn ▴ 30
0
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6
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1.4k
views
Many missing GO terms from GOHyperG call using mgu74av2
GO Survival hgu95av2 mgu74av2 Ruuid annotate multtest affy graph annaffy RBGL GOstats
updated 18.8 years ago by ★ 7.4k • written 18.8 years ago by ★ 1.4k
0
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0
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844
views
studentship till January 2007
Microarray Survival Cancer Microarray Survival Cancer
18.7 years ago Ramon Diaz ★ 1.1k
0
votes
1
reply
2.8k
views
Displaying multiple survival curves on one graph
Survival graph Survival graph
updated 18.4 years ago by ★ 7.4k • written 18.4 years ago by ▴ 30
0
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1
reply
4.2k
views
R package Installation Errors
Survival Biobase affy Survival Biobase affy
updated 18.3 years ago by 25k • written 18.3 years ago by ▴ 60
0
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2
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1.0k
views
justRMA using incorrect default cdf
GO Survival rat2302 cdf annotate genefilter affy limma affycoretools GO Survival cdf
18.2 years ago Kimpel, Mark W ▴ 890
0
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3
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1.4k
views
error in mas5calls() for soybean chip
Survival hu6800 cdf probe Biobase genefilter reposTools affy affydata limma gcrma made4
updated 18.0 years ago by ▴ 70 • written 18.0 years ago by ★ 2.2k
0
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2
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827
views
subset eset by row broken
Survival rgu34a multtest affy Survival rgu34a multtest affy
17.9 years ago Kimpel, Mark W ▴ 890
0
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0
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1.1k
views
[SPAM?] Bioconductor Digest, Vol 41, Issue 22 (Out of Office)
SNP Microarray Annotation GO Network Clustering Survival Cancer hgu133a cdf probe affy
17.8 years ago Todd Nick ▴ 10
0
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1
reply
1.1k
views
Newbie 'rflowcyt' question; problem loading facscan256.fcs
Survival Infrastructure Cancer hexbin prada rfcdmin rflowcyt Survival Infrastructure
updated 17.9 years ago by ★ 7.4k • written 17.9 years ago by ▴ 80
0
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0
replies
716
views
error in simpleaffy qc: I'm sorry, I do not know about chip type: poplarcdf
Survival cdf genefilter affy simpleaffy Survival cdf genefilter affy simpleaffy
17.8 years ago Levi Waldron ▴ 30
0
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0
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2.1k
views
Prestigious Research Fellowship in Biostatistics/Bioinformatics
Microarray Survival Infrastructure Cancer Breast bridge Microarray Survival Infrastructure
19.8 years ago Wei, Wenbin ▴ 50
0
votes
1
reply
874
views
qc
Survival Biobase genefilter affy affydata affyPLM simpleaffy affyio Survival Biobase
updated 17.7 years ago by 65k • written 17.7 years ago by ▴ 10
0
votes
3
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2.0k
views
Situation of the legend in the plotPCA of the affycoretools library
GO Survival cdf annotate genefilter multtest affy graph limma RBGL GOstats Category GO
updated 17.6 years ago by 65k • written 17.6 years ago by ▴ 350
0
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0
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779
views
SAM with censored survival data on exprSet
Survival siggenes Survival siggenes
17.6 years ago mpg33@drexel.edu ▴ 90
0
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2
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770
views
A question on GO annotations
Survival Survival
updated 17.5 years ago by ▴ 550 • written 17.5 years ago by ▴ 50
0
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4
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1.2k
views
problems with Affy vignette and affybatch objects
GO Survival cdf Biobase annotate genefilter multtest reposTools affy affydata graph GO
updated 17.5 years ago by 25k • written 17.5 years ago by ★ 2.2k
0
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1
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1.2k
views
warning from make.cdf.package - FYI
GO Survival cdf Biobase annotate genefilter graph makecdfenv limma gcrma matchprobes GO
updated 17.4 years ago by 65k • written 17.4 years ago by ★ 2.2k
0
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0
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1.0k
views
help with RankProd plaase
GO Survival cdf genefilter multtest affy limma RankProd Category affycoretools GO cdf
17.4 years ago Kimpel, Mark W ▴ 890
0
votes
12
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1.9k
views
Some Genefilter questions
GO Survival cdf genefilter geneplotter tkWidgets affy affydata widgetTools gcrma affyPLM
updated 17.4 years ago by ★ 5.5k • written 17.4 years ago by ▴ 460
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10
replies
1.9k
views
Some Genefilter questions
Normalization Survival Cancer cdf genefilter geneplotter affy affydata widgetTools gcrma
updated 17.4 years ago by ▴ 460 • written 17.4 years ago by ▴ 70
0
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2
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1.0k
views
2fold sigchanges from limma
GO Survival hgu133a2 annotate hexbin limma gcrma matchprobes annaffy GO Survival hexbin
updated 17.4 years ago by 50k • written 17.4 years ago by ▴ 60
0
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11
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2.7k
views
trouble hacking plotPCA
GO Survival Biobase genefilter affy affydata graph limma gcrma matchprobes affyPLM RBGL
updated 17.4 years ago by ▴ 10 • written 17.4 years ago by ★ 2.2k
0
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1
reply
1.5k
views
simpleaffy segmentation fault
Survival probe genefilter affy affyio Survival probe genefilter affy affyio
updated 8.9 years ago by • 0 • written 17.3 years ago by ▴ 170
0
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1
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1.8k
views
using simpleaffy incorrectly, or is there a problem with the read.affy function?
Microarray Survival Cancer genefilter affy simpleaffy affyio Microarray Survival Cancer
17.3 years ago k. brand ▴ 420
0
votes
1
reply
1.2k
views
annaffy errors
GO Survival mgu74av2 cdf annotate affy limma gcrma matchprobes annaffy simpleaffy plier
updated 17.2 years ago by 65k • written 17.2 years ago by ▴ 320
0
votes
8
replies
1.6k
views
oligo on R 2.4.1?
GO Survival annotate genefilter affy affydata matchprobes affyQCReport affyio oligo GO
updated 17.2 years ago by ★ 7.4k • written 17.2 years ago by ★ 2.2k
0
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2
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1.6k
views
can't load affycoretools because GOstats is broken. Can I load affycoretools without dependencies to use some functions?
GO Survival Biobase genefilter affy limma RBGL GOstats Category affyio affycoretools GO
17.2 years ago Mark W Kimpel ▴ 830
0
votes
1
reply
955
views
Normalization in davidTiling demo
Normalization GO Survival genefilter geneplotter affy vsn tilingArray affyio GO Survival
updated 17.1 years ago by ★ 13k • written 17.1 years ago by ★ 1.3k
0
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0
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1.7k
views
how to convert a AffyBatch into ExpressionSet object ?
Annotation GO Survival ExperimentData cdf DynDoc genefilter geneplotter multtest affy GO
16.7 years ago Min Wook Kim ▴ 20
50 results • Page 1 of 1
Recent ...
Replies
Comment: FilterByExpr low counts with small sample size by Gordon Smyth 50k
As always, it helps to see code. Are you running `voom` or `voomLmFit`? Did you run `normLibSizes()` in edgeR prior to `voom`? Are you star…
Comment: Batch correction and repeated measures by Gordon Smyth 50k
In your code, it was clear that `expr.mat` was a matrix rather than a DGEList, so it has to be a count matrix. If you have a DGEList object…
Comment: Methylation Analysis experiment design using Limma by Gordon Smyth 50k
I don't analyse methylation arrays so cannot advise on specific limma settings for that type of data. Please follow the advice of the methy…
Comment: Light difference when using coef vs omit a group when compare 3 groups. by Chris • 0
Hi Gordon, thank you so much for further guidance! I discussed this issue with doctor know about Alzheimer and they don't expect significan…
Comment: Single-Cell Data Simulation from Bulk RNA-seq by wichaidi • 0
Hi - I am wondering what you decided to do. I am currently in a similar condition where I need to create a toy scRNAseq data from bulk.
Votes
Answer: How many of my genes from my gene list are in each KEGG pathway?
Comment: Light difference when using coef vs omit a group when compare 3 groups.
DESeq2 variance transformation error and plot dispersion Estimate
A: DESeq2 variance transformation error and plot dispersion Estimate
ensembl to hgnc symbols creates duplicates
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