Bioconductor Svaseq

Showing : svaseq • reset

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5.1k

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deseq2 svaseq

7.6 years ago Akula, Nirmala NIH/NIMH [C] ▴ 190

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1.7k

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sva svaseq

updated 6.9 years ago by Guido Hooiveld ★ 3.9k • written 6.9 years ago by wamiqsaifi • 0

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2.2k

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svaseq combat sva RANseq batcheffect removebatcheffect

updated 7.5 years ago by Jakub ▴ 50 • written 7.5 years ago by amoltej ▴ 10

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2.5k

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limma sva svaseq

updated 7.2 years ago by Aaron Lun ★ 28k • written 7.2 years ago by Bogdan ▴ 670

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1.4k

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edger sva svaseq limma

updated 5.9 years ago by Ryan C. Thompson ★ 7.9k • written 5.9 years ago by cats_dogs ▴ 20

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1.6k

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deseq2 sva svaseq

updated 7.7 years ago by Michael Love 41k • written 7.7 years ago by szenitha ▴ 20

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1.5k

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deseq2 svaseq

5.3 years ago bioinfo • 0

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1.7k

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svaseq dexseq

updated 7.2 years ago by Alejandro Reyes ★ 1.9k • written 7.2 years ago by tofukaj • 0

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3.7k

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deseq2 sva svaseq pca

7.9 years ago Peter Alto ▴ 10

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1.7k

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deseq2 svaseq

updated 6.7 years ago by Michael Love 41k • written 6.7 years ago by gpalidwor ▴ 10

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1.5k

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ruvseq svaseq edaseq

updated 6.5 years ago by davide risso ▴ 950 • written 6.5 years ago by llo ▴ 10

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3.1k

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DESeq2 sva svaseq batch effect correction

6.2 years ago L_K • 0

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869

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MEDIPS svaseq sva

updated 5.2 years ago by Lukas Chavez ▴ 570 • written 5.2 years ago by tofukaj • 0

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916

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svaseq sva

5.1 years ago flippy23 • 0

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2.4k

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sva svaseq batcheffectcorrection

updated 7.7 years ago by Jeff Leek ▴ 650 • written 7.7 years ago by szenitha ▴ 20

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779

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limma sva Leafcutter SVAseq

2.6 years ago georgia.katsoula ▴ 40

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614

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RUVSeq svaseq

21 months ago Tongjun • 0

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1.2k

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sva svaseq batch effect batch effects batch effect correction

6.7 years ago vedran.franke • 0

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756

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sva svaseq surrogate variable analysis

updated 4.0 years ago by James W. MacDonald 65k • written 4.0 years ago by Mozart ▴ 30

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1.1k

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svaseq batcheffectcorrection

6.5 years ago burcu.atasu • 0

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1.1k

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RNASeq sva svaseq

updated 2.3 years ago by James W. MacDonald 65k • written 2.3 years ago by Bex • 0

21 results • Page 1 of 1

Recent ...

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Comment: Error for AnnotationForge makeOrgPackageFromNCBI function by Gayatri • 0

What I meant is even after deleting the NCBI.sqlite file, and re-running the script, an empty NCBI.sqlite file (0 kb) is created which is c…

Comment: DESeq2 output used for PCA plot on R studio by ATpoint ★ 4.0k

> Increase variability for mutants: use larger subtractive modifiers I was thinking the same as swbarnes. You're doing some data munging h…

Comment: minfi::read.metharray.exp by Basti ▴ 780

This is indeed correct now !

Comment: get BM error by Fara • 0

Thank you for the reply. The examples are these. ENSGACG00000014473 ENSGACG00000015168 ENSGACG00000007529

Comment: get BM error by Mike Smith ★ 6.5k

Can you provide an example of the Ensemble IDs you're trying to convert?

Votes

Comment: get BM error

Answer: Citation for edgeR user guide

Use of negative binomial model for exponential decay rate estimation using DESeq (or similar)

Answer: How to correct for age, sex, etc. from an RNA-seq data in DESeq2.

Answer: minfi::read.metharray.exp

Awards • All

Scholar to ATpoint ★ 4.0k