Showing : swish • reset
3
votes
2
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861
views
the result of swish function from fishpond package
fishpond swish
updated 3.9 years ago by 41k • written 3.9 years ago by • 0
3
votes
6
replies
1.3k
views
Swish with covariate for batch effect
swish fishpond
3.5 years ago thomas.dugedebernonville • 0
1
vote
1
reply
985
views
Swish with more than two conditions. Add support for contrasts?
tximeta DESeq2 swish fishpond
updated 2.2 years ago by 41k • written 2.2 years ago by ▴ 20
3
votes
5
replies
1.2k
views
Swish (fishpond) scaled counts result
Swish fishpond
3.2 years ago • updated 3.1 years ago 675743 ▴ 20
0
votes
8
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1.4k
views
swish in a blocking design?
fishpond swish
2.2 years ago • updated 2.1 years ago msll0802 • 0
0
votes
6
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1.4k
views
Running swish on a non-reference transcript assembly / tximeta import issue
tximeta swish fishpond
updated 3.0 years ago by 41k • written 3.0 years ago by • 0
5
votes
9
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1.5k
views
Questions regarding failing tximeta import for swish
swish fishpond GenomicFeatures tximeta
updated 20 months ago by 41k • written 2.0 years ago by • 0
0
votes
3
replies
660
views
Fishpond with unbalanced dataset
rna-seq salmon fishpond swish
updated 10 months ago by 41k • written 10 months ago by • 0
2
votes
2
replies
2.0k
views
Volcano plots of DEGs from Swish are weird
DESeq2 fishpond salmon swish
2.6 years ago Qin ▴ 10
4
votes
7
replies
1.0k
views
Fishpond/Swish Interaction Test Error
fishpond swish
10 months ago Miguel ▴ 20
1
vote
3
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1.4k
views
Two Genotypes Four Treatments RNA-seq Analysis
salmon rna-seq swish bootstrap fishpond
updated 2.2 years ago by 41k • written 2.2 years ago by • 0
1
vote
3
replies
1.6k
views
miRNA differential expression analysis - treat as transcript level?
tximport DESeq2 edgeR swish miRNA
updated 22 months ago by 41k • written 22 months ago by • 0
0
votes
3
replies
279
views
Interaction tests and paired interaction tests in swish
swish salmon fishpond
updated 12 weeks ago by 41k • written 12 weeks ago by • 0
0
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8
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1.3k
views
Swish log2FC NA output
swish fishpond DifferentialExpression
20 months ago jvandinter • 0
14 results • Page 1 of 1
Recent ...
Replies
Comment: How to retrieve detailed regression results from deseq2 by Weiqian ▴ 10
Hi Michael, thanks for the answer! I'll have a look : )
Comment: DESeq filtering specific to contrasts by Michael Love 41k
It will likely not filter it out, but really the per-dataset details would affect the results.
Comment: DESeq filtering specific to contrasts by Carlin95 • 0
Thanks for clarifying. Could I ask maybe one more thing for my sanity? Let's say you had a multi-factor experiment with contrasts including…
Comment: FilterByExpr low counts with small sample size by Jonathan ▴ 10
Thank you for your answer; However, I have some follow-up questions. Following up in In your [1-2-3 article][1], you say that > "... the…
Comment: DESeq2 a lot of genes showing up as differentially expressed that only have 1 sa by Seyram M. • 0
Thank you very much for your reply! I will do so. Kind regards, Seyram
Votes
Installing/switching between versions of R/Rstudio/Bioconductor on personal machine (Linux | Ubuntu)
A: Docker container with bioconductor and devtools
Answer: OrgDb for maize
Comment: significant difference of p-values with dream() after updating VariancePartition
How to tell and visualize up/down regulation of pathways from clusterprofiler gsea output
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